RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SLC25A10Q9UBX3 287 aaPredicted RBP17.11■□□□□ 0.33
VPS28-209ENST00000528142 IGHV1-69-2A0A0G2JMI3 117 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 LINC00473A8K010 186 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 SSSCA1O60232 199 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 GAPDHP04406 335 aaKnown RBP17.1■□□□□ 0.33
VPS28-209ENST00000528142 GPR12P47775 334 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 AKR1C2P52895 323 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 CLEC9AQ6UXN8 241 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 RAI1Q7Z5J4 1906 aaPredicted RBP17.1■□□□□ 0.33
VPS28-209ENST00000528142 OR2C3Q8N628 320 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 RNASE11Q8TAA1 199 aaKnown RBP17.1■□□□□ 0.33
VPS28-209ENST00000528142 TCTEX1D2Q8WW35 142 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 CACNG5Q9UF02 275 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 ROS1P08922 2347 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 C1QL1O75973 258 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 TMEM50AO95807 157 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 P0C879 139 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 NDUFB7P17568 137 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 PVALBP20472 110 aaPredicted RBP17.1■□□□□ 0.33
VPS28-209ENST00000528142 C4orf17Q53FE4 359 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 SPAG16Q8N0X2 631 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 GAB2Q9UQC2 676 aa17.1■□□□□ 0.33
VPS28-209ENST00000528142 hADV38S2A0JD32 116 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 SLC31A2O15432 143 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 LINC00205P59089 165 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 EIF5AP63241 154 aaKnown RBP17.09■□□□□ 0.33
VPS28-209ENST00000528142 OR2B11Q5JQS5 317 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 LYPD2Q6UXB3 125 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 REG4Q9BYZ8 158 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 SMIM3Q9BZL3 60 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 LYRM2Q9NU23 88 aaPredicted RBP17.09■□□□□ 0.33
VPS28-209ENST00000528142 IDI2-AS1Q9NZ38 188 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 MMP24Q9Y5R2 645 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 LINC00312Q9Y6C7 94 aa17.09■□□□□ 0.33
VPS28-209ENST00000528142 FAM24AA6NFZ4 105 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 CHST1O43916 411 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 JTBO76095 146 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 NXPH3O95157 252 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 IGHV3-7P01780 117 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 DUTP33316 252 aaKnown RBP17.08■□□□□ 0.33
VPS28-209ENST00000528142 PAX9P55771 341 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 NHLH2Q02577 135 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 MEF2CQ06413 473 aaPredicted RBP17.08■□□□□ 0.33
VPS28-209ENST00000528142 CT45A1Q5HYN5 189 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 CT45A3Q8NHU0 189 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 BARX1Q9HBU1 254 aaPredicted RBP17.08■□□□□ 0.33
VPS28-209ENST00000528142 WFDC1Q9HC57 220 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 C19orf12Q9NSK7 152 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 TAS2R3Q9NYW6 316 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 KAAG1Q9UBP8 84 aa17.08■□□□□ 0.33
VPS28-209ENST00000528142 IGSF23A1L1A6 192 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 MMP23AO75900 390 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 S1PR2O95136 353 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 EWSR1Q01844 656 aaKnown RBP eCLIP17.07■□□□□ 0.32
VPS28-209ENST00000528142 ZNF816Q0VGE8 651 aaPredicted RBP17.07■□□□□ 0.32
VPS28-209ENST00000528142 TMEM30BQ3MIR4 351 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 NCR3LG1Q68D85 454 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 ZNF439Q8NDP4 499 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 TMED6Q8WW62 240 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 LEAP2Q969E1 77 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 COA4Q9NYJ1 87 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 CTSZQ9UBR2 303 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 FGF16O43320 207 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 PPOXP50336 477 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 RAB7AP51149 207 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 VAMP2P63027 116 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 ODF3L1Q8IXM7 274 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 ZNF295-AS1Q8N0V1 137 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 TMEM252Q8N6L7 170 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 UBAC2Q8NBM4 344 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 ABHD14AQ9BUJ0 271 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 ARV1Q9H2C2 271 aa17.07■□□□□ 0.32
VPS28-209ENST00000528142 MFSD2BA6NFX1 497 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 B8ZZF3 427 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 CAV2P51636 162 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 RPL31P62899 125 aaKnown RBP17.06■□□□□ 0.32
VPS28-209ENST00000528142 ZNF273Q14593 569 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 AANATQ16613 207 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 HFEQ30201 348 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 RPL39P5Q59GN2 51 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 C1orf229Q6ZS94 237 aaPredicted RBP17.06■□□□□ 0.32
VPS28-209ENST00000528142 ZNF843Q8N446 348 aa17.06■□□□□ 0.32
VPS28-209ENST00000528142 ITLN2Q8WWU7 325 aaPredicted RBP17.06■□□□□ 0.32
VPS28-209ENST00000528142 RPUSD1Q9UJJ7 312 aaKnown RBP17.06■□□□□ 0.32
VPS28-209ENST00000528142 KMT2BQ9UMN6 2715 aaPredicted RBP17.06■□□□□ 0.32
VPS28-209ENST00000528142 WRBO00258 174 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 NDUFB3O43676 98 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 ZG16O60844 167 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 KRASP01116 189 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 FAM157CP0CG43 387 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 G6PCP35575 357 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 CD300LFQ8TDQ1 290 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 ARFGEF3Q5TH69 2177 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 M0R1X1 148 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 NDUFA2O43678 99 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 ATG12O94817 140 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 AGAP20933 346 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 COL8A2P25067 703 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 PRAMEF5Q5TYX0 476 aa17.05■□□□□ 0.32
VPS28-209ENST00000528142 TMEM200BQ69YZ2 307 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms