RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CDNFQ49AH0 187 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 MIDNQ504T8 468 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 C5orf47Q569G3 176 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 SPRNQ5BIV9 151 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 ADAM5Q6NVV9 412 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 FAAP20Q6NZ36 180 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 RNASEKQ6P5S7 137 aaKnown RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 HAGHLQ6PII5 290 aaPredicted RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 ZNF562Q6V9R5 426 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 ASCL4Q6XD76 172 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 Q6ZR03 302 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 ZNF826PQ6ZT77 177 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 TRAPPC6BQ86SZ2 158 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 WDR86Q86TI4 376 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 SPAG16Q8N0X2 631 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 FBXL14Q8N1E6 418 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 LRRC75A-AS1Q8N1F1 130 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 FTMTQ8N4E7 242 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 TOMM5Q8N4H5 51 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 FAM89BQ8N5H3 189 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 GVQW1Q8N7I0 195 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 PXT1Q8NFP0 134 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 OR5A2Q8NGI9 324 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 OR4C16Q8NGL9 310 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 OR10R2Q8NGX6 335 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 OSR1Q8TAX0 266 aaPredicted RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 LINC01560Q8TB33 94 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 MRGPRDQ8TDS7 321 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 SCARB1Q8WTV0 552 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 FCAMRQ8WWV6 532 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 AQP3Q92482 292 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 DYRK2Q92630 601 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 NEUROG1Q92886 237 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 TMEM18Q96B42 140 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 RAB3CQ96E17 227 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 SEH1LQ96EE3 360 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 CPNE2Q96FN4 548 aaPredicted RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 MS4A10Q96PG2 267 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 C12orf57Q99622 126 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 MICU1Q9BPX6 476 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 URM1Q9BTM9 101 aaKnown RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 RTL8AQ9BWD3 113 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 TM2D1Q9BX74 207 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 PECRQ9BY49 303 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 EGLN1Q9GZT9 426 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 CST11Q9H112 138 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 MMP28Q9H239 520 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 AAMDCQ9H7C9 122 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 RBFOX1Q9NWB1 397 aaKnown RBP3.48□□□□□ -1.85
CD44-226ENST00000527889 MTFP1Q9UDX5 166 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 POU2F3Q9UKI9 436 aa3.48□□□□□ -1.85
CD44-226ENST00000527889 APCP25054 2843 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ANKRD20A5PA0PJZ0 165 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 LRP5LA4QPB2 252 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 FOXI3A8MTJ6 420 aaPredicted RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 J3QT63 122 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 SULT1C2O00338 296 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 MFNGO00587 321 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 GOSR2O14653 212 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 GEMIN2O14893 280 aaKnown RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 TCAPO15273 167 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ZG16O60844 167 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 MED6O75586 246 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 SCGNO76038 276 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 NXPH2O95156 264 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 CYB5AP00167 134 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 CSN2P05814 226 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 GTF2F2P13984 249 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ZNF250P15622 560 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 HIST1H1DP16402 221 aaKnown RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 HLA-DMAP28067 261 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 FCGR2BP31994 310 aaPredicted RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 EIF2B2P49770 351 aaKnown RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 RBM11P57052 281 aaKnown RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 KLF3P57682 345 aaPredicted RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 RAB25P57735 213 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 MRPS10P82664 201 aaKnown RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 DEFA6Q01524 100 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ZNF154Q13106 437 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ARFRP1Q13795 201 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 DAZAP2Q15038 168 aaPredicted RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 ARL6IP1Q15041 203 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 SLC9A3R2Q15599 337 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 MPPED2Q15777 294 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ANKRD55Q3KP44 614 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 FBXL19-AS1Q494R0 122 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 COX19Q49B96 90 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 PXDC1Q5TGL8 231 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ASPHD1Q5U4P2 390 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 RSBN1Q5VWQ0 802 aaPredicted RBP3.47□□□□□ -1.85
CD44-226ENST00000527889 GGNBP1Q5YKI7 109 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ELP2Q6IA86 826 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 OR52W1Q6IF63 320 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 UNQ6126/PRO20091Q6UXV3 157 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 DNM1P46Q6ZS02 220 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 C6orf201Q7Z4U5 140 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 LHFPL4Q7Z7J7 247 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 ZNF546Q86UE3 836 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 FAM219AQ8IW50 185 aa3.47□□□□□ -1.85
CD44-226ENST00000527889 MKXQ8IYA7 352 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms