RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZNF610Q8N9Z0 462 aa15.05■□□□□ 0
VIM-206ENST00000487938 RFESDQ8TAC1 157 aa15.05■□□□□ 0
VIM-206ENST00000487938 COQ2Q96H96 371 aa15.05■□□□□ 0
VIM-206ENST00000487938 SPENQ96T58 3664 aaKnown RBP15.05■□□□□ 0
VIM-206ENST00000487938 MIOXQ9UGB7 285 aa15.05■□□□□ 0
VIM-206ENST00000487938 DOCK11Q5JSL3 2073 aa15.05■□□□□ 0
VIM-206ENST00000487938 ODAMA1E959 279 aa15.05■□□□□ -0
VIM-206ENST00000487938 TMEM210A6NLX4 147 aa15.05■□□□□ -0
VIM-206ENST00000487938 DEFB108AA8MXU0 73 aa15.05■□□□□ -0
VIM-206ENST00000487938 FABP6P51161 128 aa15.05■□□□□ -0
VIM-206ENST00000487938 SPINK9Q5DT21 86 aa15.05■□□□□ -0
VIM-206ENST00000487938 INO80CQ6PI98 192 aaPredicted RBP15.05■□□□□ -0
VIM-206ENST00000487938 LHX4Q969G2 390 aa15.05■□□□□ -0
VIM-206ENST00000487938 TMPRSS5Q9H3S3 457 aa15.05■□□□□ -0
VIM-206ENST00000487938 MSL2Q9HCI7 577 aa15.05■□□□□ -0
VIM-206ENST00000487938 OOEPA6NGQ2 149 aa15.04■□□□□ -0
VIM-206ENST00000487938 OR5H1A6NKK0 313 aa15.04■□□□□ -0
VIM-206ENST00000487938 IFITM10A6NMD0 228 aa15.04■□□□□ -0
VIM-206ENST00000487938 FAM90A26D6RGX4 464 aa15.04■□□□□ -0
VIM-206ENST00000487938 ZNF737O75373 536 aa15.04■□□□□ -0
VIM-206ENST00000487938 VWA1Q6PCB0 445 aa15.04■□□□□ -0
VIM-206ENST00000487938 SPNS3Q6ZMD2 512 aa15.04■□□□□ -0
VIM-206ENST00000487938 NINJ1Q92982 152 aa15.04■□□□□ -0
VIM-206ENST00000487938 ZDHHC16Q969W1 377 aa15.04■□□□□ -0
VIM-206ENST00000487938 CLCF1Q9UBD9 225 aa15.04■□□□□ -0
VIM-206ENST00000487938 HSPB7Q9UBY9 170 aa15.04■□□□□ -0
VIM-206ENST00000487938 VAX2Q9UIW0 290 aa15.04■□□□□ -0
VIM-206ENST00000487938 USF3Q68DE3 2245 aa15.04■□□□□ -0
VIM-206ENST00000487938 LRRC30A6NM36 301 aa15.04■□□□□ -0
VIM-206ENST00000487938 NKX2-8O15522 239 aa15.04■□□□□ -0
VIM-206ENST00000487938 ZG16O60844 167 aa15.04■□□□□ -0
VIM-206ENST00000487938 PTBP3O95758 552 aaKnown RBP15.04■□□□□ -0
VIM-206ENST00000487938 SSTR5P35346 364 aa15.04■□□□□ -0
VIM-206ENST00000487938 SLC35E4Q6ICL7 350 aa15.04■□□□□ -0
VIM-206ENST00000487938 ACSM6Q6P461 480 aa15.04■□□□□ -0
VIM-206ENST00000487938 ACP7Q6ZNF0 438 aa15.04■□□□□ -0
VIM-206ENST00000487938 Q6ZT83 130 aa15.04■□□□□ -0
VIM-206ENST00000487938 MRGPRGQ86SM5 289 aa15.04■□□□□ -0
VIM-206ENST00000487938 SDF2L1Q9HCN8 221 aa15.04■□□□□ -0
VIM-206ENST00000487938 PCNX2A6NKB5 2137 aa15.03■□□□□ -0
VIM-206ENST00000487938 B4DEV8 164 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BKO60814 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BJP06899 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BOP23527 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BBP33778 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BDP58876 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BCP62807 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 EIF4EBP1Q13541 118 aaPredicted RBP15.03■□□□□ -0
VIM-206ENST00000487938 MSMO1Q15800 293 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST2H2BEQ16778 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BHQ93079 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 PINX1Q96BK5 328 aaKnown RBP15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BNQ99877 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 HIST1H2BMQ99879 126 aa15.03■□□□□ -0
VIM-206ENST00000487938 SSX3Q99909 188 aa15.03■□□□□ -0
VIM-206ENST00000487938 TOLLIPQ9H0E2 274 aa15.03■□□□□ -0
VIM-206ENST00000487938 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.03■□□□□ -0
VIM-206ENST00000487938 NBEAQ8NFP9 2946 aa15.03■□□□□ -0
VIM-206ENST00000487938 TIMM8AO60220 97 aaPredicted RBP15.03■□□□□ -0
VIM-206ENST00000487938 RBMXL2O75526 392 aaKnown RBP15.03■□□□□ -0
VIM-206ENST00000487938 COL10A1Q03692 680 aa15.03■□□□□ -0
VIM-206ENST00000487938 LTC4SQ16873 150 aa15.03■□□□□ -0
VIM-206ENST00000487938 WDR31Q8NA23 367 aa15.03■□□□□ -0
VIM-206ENST00000487938 ZBTB34Q8NCN2 500 aa15.03■□□□□ -0
VIM-206ENST00000487938 DCTN5Q9BTE1 182 aa15.03■□□□□ -0
VIM-206ENST00000487938 SLC25A22Q9H936 323 aa15.03■□□□□ -0
VIM-206ENST00000487938 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.02□□□□□ -0.01
VIM-206ENST00000487938 P0C879 139 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 WDR82Q6UXN9 313 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 OR13A1Q8NGR1 328 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 PLPPR2Q96GM1 343 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 FAM210BQ96KR6 192 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 P2RX4Q99571 388 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 GGACTQ9BVM4 153 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 PARD6GQ9BYG4 376 aaPredicted RBP15.02□□□□□ -0.01
VIM-206ENST00000487938 CXXC4Q9H2H0 198 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 OR51M1Q9H341 326 aa15.02□□□□□ -0.01
VIM-206ENST00000487938 C1QTNF9BB2RNN3 333 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 CYB5R3P00387 301 aaPredicted RBP15.01□□□□□ -0.01
VIM-206ENST00000487938 HOXC12P31275 282 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 KIR2DL2P43627 348 aaPredicted RBP15.01□□□□□ -0.01
VIM-206ENST00000487938 CDX1P47902 265 aaPredicted RBP15.01□□□□□ -0.01
VIM-206ENST00000487938 CATR1Q13166 79 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 LINC00473A8K010 186 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 CLDN34H7C241 214 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 ST8SIA5O15466 376 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 FGF7P21781 194 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 CD81P60033 236 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 PNRC1Q12796 327 aaPredicted RBP15.01□□□□□ -0.01
VIM-206ENST00000487938 C4orf17Q53FE4 359 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 PDZD11Q5EBL8 140 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 GFI1BQ5VTD9 330 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 WDR25Q64LD2 544 aaPredicted RBP15.01□□□□□ -0.01
VIM-206ENST00000487938 C9orf106Q8NAJ2 232 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 FDCSPQ8NFU4 85 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 DTD1Q8TEA8 209 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 GATAD1Q8WUU5 269 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 PSG11Q9UQ72 335 aa15.01□□□□□ -0.01
VIM-206ENST00000487938 ZFHX4Q86UP3 3567 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms