RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ABHD14BQ96IU4 210 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 OR5B12Q96R08 314 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TMED9Q9BVK6 235 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CCDC90BQ9GZT6 254 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 C11orf54Q9H0W9 315 aaPredicted RBP9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 FBXL15Q9H469 300 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 KIAA1456Q9P272 454 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 GAB2Q9UQC2 676 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 FOXA2Q9Y261 457 aaPredicted RBP9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SMAD5-AS1Q9Y6J3 95 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TENM2Q9NT68 2774 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 IGKV1-6A0A0C4DH72 117 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LINC01619G3V211 115 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 C3orf84H3BNL1 204 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 DENRO43583 198 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MRPS14O60783 128 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LGALS1P09382 135 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SSBP2P81877 361 aaPredicted RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TPBGQ13641 420 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HSD17B12Q53GQ0 312 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 GLDNQ6ZMI3 551 aaPredicted RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SBSPONQ8IVN8 264 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 OR6M1Q8NGM8 313 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 UFD1Q92890 307 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RHOVQ96L33 236 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ASCL2Q99929 193 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HDHD3Q9BSH5 251 aaPredicted RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 YTHDF1Q9BYJ9 559 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 Q9N2K0 584 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ISYNA1Q9NPH2 558 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PLEKHJ1Q9NW61 149 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 OR1A1Q9P1Q5 309 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 AK3Q9UIJ7 227 aa9.44□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 IGHV4OR15-8A0A075B7B6 117 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 A0A087WW49 117 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 A0A1W2PN81 502 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SLC17A2O00624 439 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LDLRAD4O15165 306 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 IGKV1-16P04430 117 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SCTP09683 121 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PSMA1P25786 263 aaKnown RBP9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CHRNA7P36544 502 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CEACAM6P40199 344 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SLURP1P55000 103 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LINC00205P59089 165 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 GABARAPL2P60520 117 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TMEM267Q0VDI3 215 aaPredicted RBP9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PSG5Q15238 335 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TRAM1Q15629 374 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ECSCRQ19T08 205 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PYHIN1Q6K0P9 492 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ZNF383Q8NA42 475 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CASTOR1Q8WTX7 329 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LYSTQ99698 3801 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MGAT4AQ9UM21 535 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 WASHC3Q9Y3C0 194 aa9.43□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HSPB1P04792 205 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CRYGBP07316 175 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SPNP16150 400 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ZBTB25P24278 435 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HLA-DRB3P79483 266 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ACTBL2Q562R1 376 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PLAC9Q5JTB6 97 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LIPKQ5VXJ0 399 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PPP1R27Q86WC6 154 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 EDARADDQ8WWZ3 215 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 KCNK7Q9Y2U2 307 aa9.42□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ARPC1BO15143 372 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SPDEFO95238 335 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 BRI3O95415 125 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 IGLV2-23P01705 113 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 GSTP1P09211 210 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HSMCR30P0CW71 290 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ARSBP15848 533 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MLLT11Q13015 90 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TBCEQ15813 527 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 Q8N1Y9 231 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 DRAXINQ8NBI3 349 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 LFNGQ8NES3 379 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TMEM203Q969S6 136 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ARHGAP5-AS1Q96IT6 56 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 FAM103A1Q9BTL3 118 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 URM1Q9BTM9 101 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PECRQ9BY49 303 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SLA2Q9H6Q3 261 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CHMP1AQ9HD42 196 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 METTL1Q9UBP6 276 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RNF150Q9ULK6 438 aa9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 AK6Q9Y3D8 172 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 H7C2Y5 167 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SAP30O75446 220 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CA2P00918 260 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TFAP2AP05549 437 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 OR8U9P0C7N5 309 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 GP9P14770 177 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CPEP16870 476 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RANBP1P43487 201 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 VEGFCP49767 419 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RPS25P62851 125 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 P2RY14Q15391 338 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms