RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CNN2Q99439 309 aaKnown RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 CHST5Q9GZS9 411 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 AKIP1Q9NQ31 210 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 DHDHQ9UQ10 334 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 LPAP08519 4548 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 FSIP2Q5CZC0 6907 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 TRBV9A0A0B4J1U6 114 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 TRAV25A0A0B4J276 109 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 FAM90A7PA6NKC0 464 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 DHRS7CA6NNS2 312 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 ZNF705EA8MWA4 302 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 PTGES3LE9PB15 166 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 DEGS1O15121 323 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 GATCO43716 136 aaKnown RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 DIRAS3O95661 229 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 CYB5AP00167 134 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 OXTP01178 125 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 H2AFXP16104 143 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 IL3RAP26951 378 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 CD40LGP29965 261 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 CRISP1P54107 249 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 RHOGP84095 191 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 CKAP4Q07065 602 aaKnown RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 TMEM187Q14656 261 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 FXYD3Q14802 87 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 PSG5Q15238 335 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 PAN3Q58A45 887 aaKnown RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 SAPCD1Q5SSQ6 148 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 C6orf183Q5T699 404 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 LCE2AQ5TA79 106 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 GLDNQ6ZMI3 551 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 Q6ZRN7 208 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 ZNF833PQ6ZTB9 187 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 CLVS1Q8IUQ0 354 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 CPOQ8IVL8 374 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 ELMOD2Q8IZ81 293 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 ZNF680Q8NEM1 530 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 BBS1Q8NFJ9 593 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 OR5D18Q8NGL1 313 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 DEFB104AQ8WTQ1 72 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 ARL11Q969Q4 196 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 BORCS8Q96FH0 119 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 USMG5Q96IX5 58 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 SLC29A1Q99808 456 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 SPAG8Q99932 426 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 ROPN1Q9HAT0 212 aaPredicted RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 VCX3AQ9NNX9 186 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 SSU72Q9NP77 194 aaKnown RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 SPATA2Q9UM82 520 aa3.37□□□□□ -1.87
USP4-209ENST00000475873 FAM32AQ9Y421 112 aaKnown RBP3.37□□□□□ -1.87
USP4-209ENST00000475873 SAA2-SAA4A0A096LPE2 208 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 C5orf51A6NDU8 294 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 PCP4L1A6NKN8 68 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 DBX1A6NMT0 343 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 F8W735 103 aaPredicted RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 H0YJW9 148 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 H3BNX3 289 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 TSPAN4O14817 238 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 HTR3BO95264 441 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 SAA2P0DJI9 122 aaPredicted RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 CT45A6P0DMU7 189 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 CT45A5P0DMU8 189 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 CT45A7P0DMV0 189 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 CAMLGP49069 296 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 RBP2P50120 134 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 ELLP55199 621 aaPredicted RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 ROM1Q03395 351 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 TSPAN31Q12999 210 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 PLGLAQ15195 96 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 ODF4Q2M2E3 257 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 RGS21Q2M5E4 152 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 PET117Q6UWS5 81 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 ASCL4Q6XD76 172 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 C19orf35Q6ZS72 473 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 GPHB5Q86YW7 130 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 SETD9Q8NE22 299 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 OR1L1Q8NH94 360 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 CNIH3Q8TBE1 160 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 CCDC107Q8WV48 283 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 ADAT3Q96EY9 351 aaPredicted RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 BTBD10Q9BSF8 475 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 FAM192AQ9GZU8 254 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 ARMC1Q9NVT9 282 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 COA4Q9NYJ1 87 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 FAM30AQ9NZY2 134 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 RCC2Q9P258 522 aaKnown RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 METTL1Q9UBP6 276 aaKnown RBP3.36□□□□□ -1.87
USP4-209ENST00000475873 CRCT1Q9UGL9 99 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 S4R3C0 116 aa3.36□□□□□ -1.87
USP4-209ENST00000475873 A4D1N5 150 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 C15orf61A6NNL5 157 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 H0Y8G0 127 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 ANGPT2O15123 496 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 GGCTO75223 188 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 APOL3O95236 402 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 SOX14O95416 240 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 FADS2O95864 444 aaKnown RBP3.35□□□□□ -1.87
USP4-209ENST00000475873 IGHV3-23P01764 117 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 IGKV1-16P04430 117 aa3.35□□□□□ -1.87
USP4-209ENST00000475873 CRYGBP07316 175 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms