RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TRAV24A0A0B4J272 114 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 ZNF320A2RRD8 509 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 AQP12BA6NM10 295 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 C15orf61A6NNL5 157 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 H7C2Y5 167 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 FCN1O00602 326 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 FADS2O95864 444 aaKnown RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 OXTP01178 125 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 IFNA5P01569 189 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 OR9G9P0C7N8 305 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 RAP2AP10114 183 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 PRKACGP22612 351 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 ELLP55199 621 aaPredicted RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 RHOGP84095 191 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 FLOT2Q14254 428 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 MORN3Q6PF18 240 aaPredicted RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 TMEM179BQ7Z7N9 219 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 AQP12AQ8IXF9 295 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 NECAP1Q8NC96 275 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 PLPPR1Q8TBJ4 325 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 MRPS24Q96EL2 167 aaKnown RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 PHB2Q99623 299 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 DPCDQ9BVM2 203 aaPredicted RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 PARP12Q9H0J9 701 aaKnown RBP5.78□□□□□ -1.48
USP54-211ENST00000474929 JPT1Q9UK76 154 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 UFC1Q9Y3C8 167 aa5.78□□□□□ -1.48
USP54-211ENST00000474929 IGKV1-12A0A0C4DH73 117 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 FAM90A23PA8MXZ1 464 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 AIPO00170 330 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 SRSF10O75494 262 aaKnown RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 ATP5HO75947 161 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 SOX14O95416 240 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 IGKV1D-12P01611 117 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 UBCP0CG48 685 aaKnown RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 C8orf88P0DMB2 117 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ZNF20P17024 532 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ARL3P36405 182 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 MAGEA2P43356 314 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 RASSF2P50749 326 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ZNF134P52741 427 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 RPS7P62081 194 aaKnown RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 DEFA5Q01523 94 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 PSG5Q15238 335 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 LY6G6FQ5SQ64 297 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 SLC25A30Q5SVS4 291 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ELP2Q6IA86 826 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ZNF767PQ75MW2 155 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ZNF554Q86TJ5 538 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 HS3ST5Q8IZT8 346 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 OR10G2Q8NGC3 310 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 OR10V1Q8NGI7 309 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 OR8D4Q8NGM9 314 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 TEX47Q8TBZ9 253 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 GIPC3Q8TF64 312 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 CNN2Q99439 309 aaKnown RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 FEVQ99581 238 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 NIPSNAP1Q9BPW8 284 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 YTHDF1Q9BYJ9 559 aaKnown RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 IFT22Q9H7X7 185 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 MED20Q9H944 212 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 AKIP1Q9NQ31 210 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 SMPD3Q9NY59 655 aaPredicted RBP5.77□□□□□ -1.49
USP54-211ENST00000474929 PIPOXQ9P0Z9 390 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 ING4Q9UNL4 249 aa5.77□□□□□ -1.49
USP54-211ENST00000474929 SAA2-SAA4A0A096LPE2 208 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 TRBV9A0A0B4J1U6 114 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 TCRBV3S1A0A5B6 114 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 ZNF705EA8MWA4 302 aaPredicted RBP5.76□□□□□ -1.49
USP54-211ENST00000474929 H3BN98 237 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 MPPED1O15442 326 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 FKBP6O75344 327 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 MT-ND2P03891 347 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 SAA2P0DJI9 122 aaPredicted RBP5.76□□□□□ -1.49
USP54-211ENST00000474929 ATF1P18846 271 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 EDN2P20800 178 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 FUT3P21217 361 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 MED21Q13503 144 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 ALKBH1Q13686 389 aaKnown RBP5.76□□□□□ -1.49
USP54-211ENST00000474929 C12orf74Q32Q52 190 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 SLC22A6Q4U2R8 563 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 C1orf146Q5VVC0 180 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 ZNF66Q6ZN08 573 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 SLC25A42Q86VD7 318 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 IQCF1Q8N6M8 205 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 BBS1Q8NFJ9 593 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 ARMC1Q9NVT9 282 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 ST3GAL6Q9Y274 331 aa5.76□□□□□ -1.49
USP54-211ENST00000474929 TRAV39A0A0B4J263 110 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 A0A1B0GW64 132 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 PPP5D1E7EU14 171 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 F8W735 103 aaPredicted RBP5.75□□□□□ -1.49
USP54-211ENST00000474929 H0YJW9 148 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 RAB29O14966 203 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 OR2C1O95371 312 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 TMEM225BP0DP42 221 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 PRB4P10163 310 aaPredicted RBP5.75□□□□□ -1.49
USP54-211ENST00000474929 CPEP16870 476 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 GINS1Q14691 196 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 C15orf32Q32M92 178 aa5.75□□□□□ -1.49
USP54-211ENST00000474929 MORN2Q502X0 79 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms