RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CX3CL1P78423 397 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 DGCR2P98153 550 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 TRAM1Q15629 374 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 VAX1Q5SQQ9 334 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 FAM71F2Q6NXP2 309 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 MOB1BQ7L9L4 216 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 NR2C2APQ86WQ0 139 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 ZNF383Q8NA42 475 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 MINDY2Q8NBR6 621 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 OR5AN1Q8NGI8 311 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 OR5M8Q8NGP6 311 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 MAFIPQ8WZ33 124 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 C5orf30Q96GV9 206 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 CMSS1Q9BQ75 279 aaKnown RBP12.94□□□□□ -0.34
USP40-212ENST00000473191 GPR61Q9BZJ8 451 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 C12orf4Q9NQ89 552 aa12.94□□□□□ -0.34
USP40-212ENST00000473191 SMIM30A4D0T7 59 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 SEC14L6B5MCN3 397 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 H7C2Y5 167 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 DENRO43583 198 aaKnown RBP12.93□□□□□ -0.34
USP40-212ENST00000473191 OR5H8P0DN80 308 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 ZBTB25P24278 435 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 UBE2E2Q96LR5 201 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 RIMS4Q9H426 269 aaPredicted RBP12.93□□□□□ -0.34
USP40-212ENST00000473191 ACOT13Q9NPJ3 140 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 KIAA1456Q9P272 454 aa12.93□□□□□ -0.34
USP40-212ENST00000473191 ELF5Q9UKW6 265 aaPredicted RBP12.93□□□□□ -0.34
USP40-212ENST00000473191 KMT2CQ8NEZ4 4911 aaKnown RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 OR5H14A6NHG9 310 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 ITGB1BP1O14713 200 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 HSPA12AO43301 675 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 GSTP1P09211 210 aaKnown RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 GNB3P16520 340 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 PSMA1P25786 263 aaKnown RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 ECI1P42126 302 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 CD69Q07108 199 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 TBCEQ15813 527 aaPredicted RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 ZNF260Q3ZCT1 412 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 IGSF11Q5DX21 431 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 C9orf66Q5T8R8 295 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 TMEM65Q6PI78 240 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 OR1N2Q8NGR9 330 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 PTX4Q96A99 478 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 B9D2Q9BPU9 175 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 RDH8Q9NYR8 311 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 ZNF230Q9UIE0 474 aaPredicted RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 VSIG4Q9Y279 399 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 WASHC3Q9Y3C0 194 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 LSM4Q9Y4Z0 139 aaKnown RBP12.92□□□□□ -0.34
USP40-212ENST00000473191 NUBP2Q9Y5Y2 271 aa12.92□□□□□ -0.34
USP40-212ENST00000473191 TRDCB7Z8K6 153 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 GSTT2P0CG29 244 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 GSTT2BP0CG30 244 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 SLURP1P55000 103 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 SSBP2P81877 361 aaPredicted RBP12.91□□□□□ -0.34
USP40-212ENST00000473191 PLGLAQ15195 96 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 PSG5Q15238 335 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 ZNF367Q7RTV3 350 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 OR56B1Q8NGI3 324 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 DCUN1D4Q92564 292 aa12.91□□□□□ -0.34
USP40-212ENST00000473191 METTL1Q9UBP6 276 aaKnown RBP12.91□□□□□ -0.34
USP40-212ENST00000473191 HUWE1Q7Z6Z7 4374 aaKnown RBP12.9□□□□□ -0.34
USP40-212ENST00000473191 A0A075B6Q4 140 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 IGKV1D-8A0A087WSZ0 117 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 RAB27BO00194 218 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 ARPC1BO15143 372 aaKnown RBP12.9□□□□□ -0.34
USP40-212ENST00000473191 CA2P00918 260 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 FCGR3AP08637 254 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 CRIP2P52943 208 aaPredicted RBP12.9□□□□□ -0.34
USP40-212ENST00000473191 ZNF616Q08AN1 781 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 ZNF660Q6AZW8 331 aaPredicted RBP12.9□□□□□ -0.34
USP40-212ENST00000473191 CD200R1LQ6Q8B3 271 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 ABHD5Q8WTS1 349 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 EDARADDQ8WWZ3 215 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 MS4A10Q96PG2 267 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 CHCHD6Q9BRQ6 235 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 NDUFB11Q9NX14 153 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 RAB22AQ9UL26 194 aa12.9□□□□□ -0.34
USP40-212ENST00000473191 IGHV4OR15-8A0A075B7B6 117 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 A0A087WW49 117 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 IFITM5A6NNB3 132 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 MFNGO00587 321 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 BET1O15155 118 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 IGHV3-11P01762 117 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 MC5RP33032 325 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 RUNX1Q01196 453 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 C22orf42Q6IC83 251 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 LFNGQ8NES3 379 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 DLX4Q92988 240 aaPredicted RBP12.89□□□□□ -0.35
USP40-212ENST00000473191 RAB3CQ96E17 227 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 TOLLIPQ9H0E2 274 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 SDHAF2Q9NX18 166 aa12.89□□□□□ -0.35
USP40-212ENST00000473191 FOXA2Q9Y261 457 aaPredicted RBP12.89□□□□□ -0.35
USP40-212ENST00000473191 TRAV1-2A0A0B4J238 106 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 M0R1X1 148 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 FABP7O15540 132 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 SLC25A17O43808 307 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 RAMP3O60896 148 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 IGLV2-23P01705 113 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 OR8U8P0C7N1 319 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms