RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TMEM189A5PLL7 270 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 GPX4P36969 197 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-209ENST00000472056 MARS2Q96GW9 593 aaKnown RBP11.63□□□□□ -0.55
COL6A3-209ENST00000472056 FOXJ2Q9P0K8 574 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 K7N7A8 449 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 HBBP68871 147 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 CLEC5AQ9NY25 188 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 SPANXCQ9NY87 97 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 CLEC1BQ9P126 229 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 FAM53AQ6NSI3 398 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-209ENST00000472056 OLIG3Q7RTU3 272 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 ASCL3Q9NQ33 180 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 TMEM140Q9NV12 185 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 AUP1Q9Y679 476 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 ANKRD33Q7Z3H0 272 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 CDC42EP2O14613 210 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 LINC00869P0C866 280 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 SRFP11831 508 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 VSTM2LQ96N03 204 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 ZFP64Q9NPA5 681 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 WFDC8Q8IUA0 241 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 MGAMO43451 1857 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 LIPT2A6NK58 231 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 CXCL2P19875 107 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 METTL26Q96S19 204 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 SH3BGRL3Q9H299 93 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 PXMP4Q9Y6I8 212 aa11.63□□□□□ -0.55
COL6A3-209ENST00000472056 MNX1P50219 401 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-209ENST00000472056 UCP3P55916 312 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 OR11G2Q8NGC1 345 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 OR51B2Q9Y5P1 312 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 A8MXK9 166 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 EML2O95834 649 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 DEFB103AP81534 67 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 ANKRD10Q9NXR5 420 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 CD74P04233 296 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 MYOGP15173 224 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 ROM1Q03395 351 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 TCTN1Q2MV58 587 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF793Q6ZN11 406 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 OR4A5Q8NH83 315 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 HSPB7Q9UBY9 170 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 FAM216AQ8WUB2 273 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 HIST1H2BAQ96A08 127 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF414Q96IQ9 312 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 RBM11P57052 281 aaKnown RBP11.62□□□□□ -0.55
COL6A3-209ENST00000472056 OR10J6PQ8NGY7 276 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 WFDC5Q8TCV5 224 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 AQP3Q92482 292 aa11.62□□□□□ -0.55
COL6A3-209ENST00000472056 INO80CQ6PI98 192 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-209ENST00000472056 THSD4Q6ZMP0 1018 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 PLSCR2Q9NRY7 297 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 PHLDA3Q9Y5J5 127 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 HERPUD1Q15011 391 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 LYZL2Q7Z4W2 148 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 SMIM8Q96KF7 97 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 C2orf88Q9BSF0 95 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ALKBH7Q9BT30 221 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-209ENST00000472056 SPTY2D1-AS1A0A0U1RR47 76 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 DEFB108BQ8NET1 73 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 TAF15Q92804 592 aaKnown RBP eCLIP11.61□□□□□ -0.55
COL6A3-209ENST00000472056 HEXA-AS1Q9H8Q6 139 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 INSIG2Q9Y5U4 225 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 OR11H12B2RN74 326 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 MGPP08493 103 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 RPS27P42677 84 aaKnown RBP11.61□□□□□ -0.55
COL6A3-209ENST00000472056 OR11H1Q8NG94 326 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 OR11H2Q8NH07 326 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 SSMEM1Q8WWF3 244 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ADAD2Q8NCV1 583 aaKnown RBP11.61□□□□□ -0.55
COL6A3-209ENST00000472056 MESTQ5EB52 335 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF506Q5JVG8 444 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 OR10AC1Q8NH08 325 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ST6GALNAC2Q9UJ37 374 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ZP4Q12836 540 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 LRRC29Q8WV35 223 aa11.61□□□□□ -0.55
COL6A3-209ENST00000472056 ODAMA1E959 279 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 H7C1H1 209 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 MRGPRDQ8TDS7 321 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 GREB1LQ9C091 1923 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-209ENST00000472056 NCOA6Q14686 2063 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-209ENST00000472056 OR8B2Q96RD0 313 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 GCM2O75603 506 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-209ENST00000472056 FAM181AQ8N9Y4 354 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 PCGF1Q9BSM1 259 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 GSN-AS1Q9NRJ2 163 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 TNFSF14O43557 240 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 NDUFB4O95168 129 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 RHBDD2Q6NTF9 364 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 BATF2Q8N1L9 274 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 RLFQ13129 1914 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 CEACAM18A8MTB9 384 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 PRDX2P32119 198 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 KCNMB1Q16558 191 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 PRSS8Q16651 343 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 SLC23A3Q6PIS1 610 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 ZNF841Q6ZN19 808 aa11.6□□□□□ -0.55
COL6A3-209ENST00000472056 PEX11BO96011 259 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms