RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 BOLLQ8N9W6 283 aaKnown RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 ZBTB8BQ8NAP8 495 aaPredicted RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 OR1L1Q8NH94 360 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 CCL13Q99616 98 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 C19orf24Q9BVV8 132 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 GAL3ST2Q9H3Q3 398 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 SLA2Q9H6Q3 261 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 OR2S2Q9NQN1 319 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 CCL28Q9NRJ3 127 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 CALYQ9NYX4 217 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 SLC25A10Q9UBX3 287 aaPredicted RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 MIOXQ9UGB7 285 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 ARHGAP32A7KAX9 2087 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 TMPRSS2O15393 492 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 ATG12O94817 140 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 IGHV2-70P01814 119 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 RBP4P02753 201 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 VDAC1P21796 283 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 PSMB6P28072 239 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 LMO4P61968 165 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 SLC9A3R2Q15599 337 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 C17orf58Q2M2W7 97 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 DCAF12L2Q5VW00 463 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 LAMTOR1Q6IAA8 161 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 C11orf87Q6NUJ2 197 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 C9orf62Q8N4C0 152 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 OR11H4Q8NGC9 324 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 C8orf46Q8TAG6 207 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 CD300LFQ8TDQ1 290 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 RAB1CQ92928 201 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 LSM10Q969L4 123 aaKnown RBP9.68□□□□□ -0.86
USP54-209ENST00000464635 TIMD4Q96H15 378 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 HSD17B10Q99714 261 aaKnown RBP9.68□□□□□ -0.86
USP54-209ENST00000464635 SPIN2AQ99865 258 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 SPIN2BQ9BPZ2 258 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 TMEM246Q9BRR3 403 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 PDCD10Q9BUL8 212 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 METTL8Q9H825 291 aaKnown RBP9.68□□□□□ -0.86
USP54-209ENST00000464635 LIN7CQ9NUP9 197 aaKnown RBP9.68□□□□□ -0.86
USP54-209ENST00000464635 GFOD1Q9NXC2 390 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 OR1A1Q9P1Q5 309 aa9.68□□□□□ -0.86
USP54-209ENST00000464635 DOCK11Q5JSL3 2073 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 A0A087X0M5 115 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 A0A0D9SG52 128 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 A0A1B0GX30 115 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 A0A1W2PPH5 198 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 C5orf51A6NDU8 294 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 B4DSR2 109 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 OR2F2O95006 317 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 MPC2O95563 127 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 SRP14P37108 136 aaKnown RBP9.67□□□□□ -0.86
USP54-209ENST00000464635 EDDM3BP56851 147 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 CATR1Q13166 79 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 OR2F1Q13607 317 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 PHLDA2Q53GA4 152 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 FAM201AQ5SY85 155 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 HEPN1Q6WQI6 88 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 FAM219AQ8IW50 185 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 DEFB108BQ8NET1 73 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 THAP6Q8TBB0 222 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 ZNF596Q8TC21 504 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 PPP1R1CQ8WVI7 109 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 RBPMSQ93062 196 aaKnown RBP9.67□□□□□ -0.86
USP54-209ENST00000464635 IDI2-AS1Q9NZ38 188 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 CACFD1Q9UGQ2 172 aa9.67□□□□□ -0.86
USP54-209ENST00000464635 RBM7Q9Y580 266 aaKnown RBP9.67□□□□□ -0.86
USP54-209ENST00000464635 RBFOX2O43251 390 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP54-209ENST00000464635 ADAM20O43506 726 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 SIX6O95475 246 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 MSMBP08118 114 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 OR8U9P0C7N5 309 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 SSTR5P35346 364 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 RPL31P62899 125 aaKnown RBP9.66□□□□□ -0.86
USP54-209ENST00000464635 TAGLNQ01995 201 aaKnown RBP9.66□□□□□ -0.86
USP54-209ENST00000464635 EDDM3AQ14507 147 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 LGALSLQ3ZCW2 172 aaPredicted RBP9.66□□□□□ -0.86
USP54-209ENST00000464635 GGNBP1Q5YKI7 109 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 FAM71F2Q6NXP2 309 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 ZNF695Q8IW36 515 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 SELENOHQ8IZQ5 122 aaKnown RBP9.66□□□□□ -0.86
USP54-209ENST00000464635 LINC00311Q8N616 119 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 DRAM1Q8N682 238 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 OR52L2PQ8NGH6 319 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 OR8U1Q8NH10 309 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 TNFRSF14Q92956 283 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 TMEM186Q96B77 213 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 ADTRPQ96IZ2 230 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 TP53RKQ96S44 253 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 CHIAQ9BZP6 476 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 HIF1ANQ9NWT6 349 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 COA4Q9NYJ1 87 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 RPUSD1Q9UJJ7 312 aaKnown RBP9.66□□□□□ -0.86
USP54-209ENST00000464635 WNK2Q9Y3S1 2297 aa9.66□□□□□ -0.86
USP54-209ENST00000464635 TRAV14DV4A0A0A6YYC5 116 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 TRAV39A0A0B4J263 110 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 A0A1B0GU03 582 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 FAM90A9PA6NNJ1 464 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 HSD17B6O14756 317 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 ZNF205O95201 554 aa9.65□□□□□ -0.86
USP54-209ENST00000464635 RLN2P04090 185 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms