RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CPEB3Q8NE35 698 aaKnown RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CADM4Q8NFZ8 388 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 ASCL3Q9NQ33 180 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CHCHD2Q9Y6H1 151 aaPredicted RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 RAMP3O60896 148 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 NDUFB8O95169 186 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 COMPP49747 757 aaPredicted RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 SOX8P57073 446 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 SLC35B1P78383 322 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 PRDX4Q13162 271 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 TEX43Q6ZNM6 134 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 FOXL2NBQ6ZUU3 175 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 NUFIP2Q7Z417 695 aaKnown RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 BAGE3Q86Y29 109 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 BAGE2Q86Y30 109 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CIB3Q96Q77 187 aaPredicted RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CFHR5Q9BXR6 569 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 IL36GQ9NZH8 169 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CCL25O15444 150 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 ZFAND5O76080 213 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 G6PCP35575 357 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 MRPS21P82921 87 aaKnown RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 HOXA4Q00056 320 aaPredicted RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 RNPS1Q15287 305 aaKnown RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 HLA-DRB5Q30154 266 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 MAJINQ3KP22 176 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 ASPHD1Q5U4P2 390 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 TMEM144Q7Z5S9 345 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 YRDCQ86U90 279 aaKnown RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 OR2H1Q9GZK4 316 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 TMEM38BQ9NVV0 291 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 EDDM3BP56851 147 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 TMEM183BQ1AE95 376 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 ANKRD39Q53RE8 183 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 OR1L6Q8NGR2 347 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 C20orf144Q9BQM9 153 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 PRRC2CQ9Y520 2896 aaKnown RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 KIR2DS1A0A191URI9 304 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 OR6C6A6NF89 314 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 ZG16O60844 167 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 CRISP2P16562 243 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 KIR2DS4P43632 304 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 LHX2P50458 406 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 CCR5P51681 352 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 TPPP2P59282 170 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 KIR2DS1Q14954 304 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 MSMO1Q15800 293 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 RNF151Q2KHN1 245 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 PRR31Q5SQ13 230 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 FGFRL1Q8N441 504 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 ZNF808Q8N4W9 903 aaPredicted RBP9.89□□□□□ -0.83
CPSF3-202ENST00000460593 WNT10AQ9GZT5 417 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 TP73-AS1Q9UF72 201 aa9.89□□□□□ -0.83
CPSF3-202ENST00000460593 MLNRO43193 412 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 CEACAM8P31997 349 aaPredicted RBP9.88□□□□□ -0.83
CPSF3-202ENST00000460593 IER3P46695 156 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 FBXW9Q5XUX1 488 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 PLXDC1Q8IUK5 500 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 FADS6Q8N9I5 356 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 RNF138Q8WVD3 245 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 ZNF552Q9H707 407 aaPredicted RBP9.88□□□□□ -0.83
CPSF3-202ENST00000460593 TRAV24A0A0B4J272 114 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 ZIC3O60481 467 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 IGHEP01854 428 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 FGF12P61328 243 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 HYAL1Q12794 435 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 KRTCAP3Q53RY4 240 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 COL5A1-AS1Q5SY13 56 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 UNQ5815/PRO19632Q6UWF5 114 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 C7orf61Q8IZ16 206 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 OR5AU1Q8NGC0 362 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 PSMF1Q92530 271 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 SFRP2Q96HF1 295 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 FOXB1Q99853 325 aa9.88□□□□□ -0.83
CPSF3-202ENST00000460593 MRPL18Q9H0U6 180 aaKnown RBP9.88□□□□□ -0.83
CPSF3-202ENST00000460593 IGLV3-32A0A0A0MS00 114 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 SCO2A0A1W2PP80 73 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 TRAPPC2LH3BP13 241 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 DUX1O43812 170 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 RBMXL2O75526 392 aaKnown RBP9.87□□□□□ -0.83
CPSF3-202ENST00000460593 PMCHP20382 165 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 S100GP29377 79 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 ZNF90Q03938 601 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 ZFP30Q9Y2G7 519 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 RHBDL1O75783 438 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 NGFP01138 241 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 SERPINA7P05543 415 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 OR5G3P0C626 314 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 KITLGP21583 273 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 HINT1P49773 126 aaPredicted RBP9.87□□□□□ -0.83
CPSF3-202ENST00000460593 PTTG1IPP53801 180 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 RBX1P62877 108 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 LCN2P80188 198 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 SPATA45Q537H7 98 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 SLC35E1Q96K37 410 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 NPCDR1Q9BY65 106 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 MTIF3Q9H2K0 278 aaKnown RBP9.87□□□□□ -0.83
CPSF3-202ENST00000460593 DEPPQ9NTK1 212 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 A0A0G2JMM0 328 aa9.87□□□□□ -0.83
CPSF3-202ENST00000460593 MDFIC2A0A1B0GVS7 189 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms