RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GABRA1P14867 456 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 HTR2CP28335 458 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 HSD11B1P28845 292 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR3A4PP47883 348 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TAS2R19P59542 299 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SELENOTP62341 195 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SSBP1Q04837 148 aaKnown RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 ECH1Q13011 328 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 PLPPR5Q32ZL2 321 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 HIGD2BQ4VC39 106 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TCTEX1D4Q5JR98 221 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 GLYATL3Q5SZD4 288 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM244Q5VVB8 128 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR10K2Q6IF99 312 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM205Q6UW68 189 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TEX261Q6UWH6 196 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 Q6ZSR3 168 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SLC36A1Q7Z2H8 476 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 C6orf223Q8N319 242 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM252Q8N6L7 170 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM229BQ8NBD8 167 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 CHST4Q8NCG5 386 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 ZNF680Q8NEM1 530 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 NOXO1Q8NFA2 376 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR2M3Q8NG83 312 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR4K17Q8NGC6 315 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR4D6Q8NGJ1 314 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR51S1Q8NGJ8 323 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR1J4Q8NGS1 313 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 OR6N1Q8NGY5 312 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 RNF138Q8WVD3 245 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 SLAMF6Q96DU3 332 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 JSRP1Q96MG2 331 aaPredicted RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 SIGLEC12Q96PQ1 595 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 RBP7Q96R05 134 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 KIR2DL4Q99706 377 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 RARRES2Q99969 163 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 UTP23Q9BRU9 249 aaKnown RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 C19orf24Q9BVV8 132 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 DEFB126Q9BYW3 111 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 POTEKPQ9BYX7 375 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 PBOV1Q9GZY1 135 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 C1orf198Q9H425 327 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 PTGES2Q9H7Z7 377 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM138Q9NPI0 162 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 FAM206AQ9NX38 181 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 MTCH1Q9NZJ7 389 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 CLN8Q9UBY8 286 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 RHBDD3Q9Y3P4 386 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 WIF1Q9Y5W5 379 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 MRPS18BQ9Y676 258 aaKnown RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 U3KQ87 197 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 U3KQA8 63 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 TMEM131Q92545 1883 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 FANCMQ8IYD8 2048 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 MDC1Q14676 2089 aaKnown RBP3.07□□□□□ -1.92
VPS29-202ENST00000447578 ATG2BQ96BY7 2078 aa3.07□□□□□ -1.92
VPS29-202ENST00000447578 IGHV3OR16-13A0A075B7E8 117 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 IGLV3-32A0A0A0MS00 114 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 A0A0A6YYH2 397 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 LINC00862A6NCI5 91 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 A6NJ64 397 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 LEUTXA8MZ59 168 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 SRRM5B3KS81 715 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ZNF736B4DX44 427 aaPredicted RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 DISC1C4P0D8 188 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 F5H5P2 479 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 G3V3Q6 166 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 M0R233 179 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 SULT1C2O00338 296 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 TP53I11O14683 189 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ARPC5O15511 151 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 MPC2O95563 127 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 CFDP00746 253 aaPredicted RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 IFNA7P01567 189 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 MBP02144 154 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 TTRP02766 147 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 CD3DP04234 171 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ACSM4P0C7M7 580 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 PGA4P0DJD7 388 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 PGA3P0DJD8 388 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 CXCL2P19875 107 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 KLK2P20151 261 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 RAB3AP20336 220 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ZP3P21754 424 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 BMI1P35226 326 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 NUP62P37198 522 aaPredicted RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 P2RY4P51582 365 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 CLDN6P56747 220 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ZNF121P58317 390 aaPredicted RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 ACTBP60709 375 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 UBE2MP61081 183 aaKnown RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 RAB14P61106 215 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 ACTG1P63261 375 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 SLC35A1P78382 337 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 GRK1Q15835 563 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 Q1RN00 199 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 TMEM176BQ3YBM2 270 aaPredicted RBP3.06□□□□□ -1.92
VPS29-202ENST00000447578 CDNFQ49AH0 187 aa3.06□□□□□ -1.92
VPS29-202ENST00000447578 SCGB2B2Q4G0G5 96 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms