RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SLC35E3Q7Z769 313 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 C1QL4Q86Z23 238 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 OPN3Q9H1Y3 402 aaPredicted RBP13.38□□□□□ -0.27
SHQ1-202ENST00000444040 BCL2P10415 239 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 GCH1P30793 250 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 OR2B8PP59922 312 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 SMIM21Q3B7S5 101 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 BTNL3Q6UXE8 466 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 CD177Q8N6Q3 437 aa13.38□□□□□ -0.27
SHQ1-202ENST00000444040 AHRRA9YTQ3 701 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 PAX5Q02548 391 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 TMEM41BQ5BJD5 291 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 OR8G2PQ6IF36 304 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 TCTEX1D2Q8WW35 142 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 TAAR6Q96RI8 345 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 AGMATQ9BSE5 352 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.37□□□□□ -0.27
SHQ1-202ENST00000444040 CACNA1GO43497 2377 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 ZFHX4Q86UP3 3567 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 OR5H1A6NKK0 313 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 ZFP92A6NM28 416 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 PMS2P5A8MQ11 134 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 C15orf65H3BRN8 121 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 FGF8P55075 233 aaPredicted RBP13.37□□□□□ -0.27
SHQ1-202ENST00000444040 CENPVQ7Z7K6 275 aaPredicted RBP13.37□□□□□ -0.27
SHQ1-202ENST00000444040 TCTEX1D1Q8N7M0 179 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 PINX1Q96BK5 328 aaKnown RBP13.37□□□□□ -0.27
SHQ1-202ENST00000444040 METTL1Q9UBP6 276 aaKnown RBP13.37□□□□□ -0.27
SHQ1-202ENST00000444040 PRR14LQ5THK1 2151 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 ASPMQ8IZT6 3477 aa13.37□□□□□ -0.27
SHQ1-202ENST00000444040 IGHV3-43A0A0B4J1X8 118 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 UBE2L5PA0A1B0GUS4 154 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 LINC00473A8K010 186 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 CLDN14O95500 239 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 CD55P08174 381 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 IGHV3-43DP0DP04 118 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 LINC00205P59089 165 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 SEM1Q6ZVN7 128 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 RFESDQ8TAC1 157 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 CLN8Q9UBY8 286 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 PROCRQ9UNN8 238 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 P2RY6Q15077 328 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 ELOBQ15370 118 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 MSMPQ1L6U9 139 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 CA5BP1Q8WTZ4 195 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 LRRC29Q8WV35 223 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 DCTN5Q9BTE1 182 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 TIMM9Q9Y5J7 89 aa13.36□□□□□ -0.27
SHQ1-202ENST00000444040 RAB29O14966 203 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ZNF737O75373 536 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 IGKV1D-33P01593 117 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 IGKV1-33P01594 117 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 FABP9Q0Z7S8 132 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 DEFB109BQ30KR1 87 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ZNF66Q6ZN08 573 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 BHLHA15Q7RTS1 189 aaPredicted RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 RPP25LQ8N5L8 163 aaKnown RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 SLC25A15Q9Y619 301 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 GALR2O43603 387 aaPredicted RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ZG16O60844 167 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 PRDX2P32119 198 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ELLP55199 621 aaPredicted RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 RAB11AP62491 216 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 HTD2P86397 168 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ZNF343Q6P1L6 599 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 RBMS3Q6XE24 437 aaKnown RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 C1orf174Q8IYL3 243 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 FAM169BQ8N8A8 192 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 MRPL37Q9BZE1 423 aaKnown RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 SIRT7Q9NRC8 400 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 PRRC2CQ9Y520 2896 aaKnown RBP13.35□□□□□ -0.27
SHQ1-202ENST00000444040 CXorf65A6NEN9 183 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 DEFB108AA8MXU0 73 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 ST8SIA5O15466 376 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 CEACAM4O75871 244 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 EGR1P18146 543 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 Q8WTZ3 238 aa13.35□□□□□ -0.27
SHQ1-202ENST00000444040 MAP1LC3B2A6NCE7 125 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 ERVFRD-1P60508 538 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 PMS2P11Q13670 270 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 ATP6V1FQ16864 119 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 DTD1Q8TEA8 209 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 ZDHHC16Q969W1 377 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 P2RX4Q99571 388 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MAP1LC3BQ9GZQ8 125 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 PSG11Q9UQ72 335 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MBD3L4A6NDZ8 208 aaPredicted RBP13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MBD3L3A6NE82 208 aaPredicted RBP13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MBD3L5A6NJ08 208 aaPredicted RBP13.34□□□□□ -0.27
SHQ1-202ENST00000444040 SRRM5B3KS81 715 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 PROP1O75360 226 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 IFNA17P01571 189 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 S100A8P05109 93 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 ADH4P08319 380 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 CXCL1P09341 107 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 PLA2G5P39877 138 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 Q3ZCU0 254 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MRGPRGQ86SM5 289 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 OR2Z1Q8NG97 314 aa13.34□□□□□ -0.27
SHQ1-202ENST00000444040 MBD3L2Q8NHZ7 208 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms