RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 WDR31Q8NA23 367 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 TCTEX1D2Q8WW35 142 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 FAM234AQ9H0X4 552 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 PARP11Q9NR21 331 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 PROCRQ9UNN8 238 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 AKAP6Q13023 2319 aa7.97□□□□□ -1.13
CUX1-206ENST00000437600 ABCA1O95477 2261 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 VPS13CQ709C8 3753 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 GAPDHP04406 335 aaKnown RBP7.96□□□□□ -1.13
CUX1-206ENST00000437600 CD55P08174 381 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 SSTR5P35346 364 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 GLIPR1P48060 266 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 ZNF83P51522 516 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 ARL16Q0P5N6 197 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 IL13RA2Q14627 380 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 GUSBP1Q15486 140 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 NCMAPQ5T1S8 102 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 IL34Q6ZMJ4 242 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 SNRNP40Q96DI7 357 aaKnown RBP7.96□□□□□ -1.13
CUX1-206ENST00000437600 ABHD14BQ96IU4 210 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 RTL8AQ9BWD3 113 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 VSIRQ9H7M9 311 aa7.96□□□□□ -1.13
CUX1-206ENST00000437600 METTL1Q9UBP6 276 aaKnown RBP7.96□□□□□ -1.13
CUX1-206ENST00000437600 J3QT63 122 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 PTBP3O95758 552 aaKnown RBP7.96□□□□□ -1.14
CUX1-206ENST00000437600 OR8U8P0C7N1 319 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 UCP1P25874 307 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 DVL1P1P54792 670 aaPredicted RBP7.96□□□□□ -1.14
CUX1-206ENST00000437600 OR2B8PP59922 312 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 ID3Q02535 119 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 SAPCD1Q5SSQ6 148 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 GPR157Q5UAW9 335 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 SLC25A24Q6NUK1 477 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 ZNF561Q8N587 486 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 C15orf54Q8N8G6 183 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 GAB2Q9UQC2 676 aa7.96□□□□□ -1.14
CUX1-206ENST00000437600 IGHV3OR15-7A0A075B7D8 119 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 hCG_1809904A0A1W2PP81 198 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 A0A1W2PR64 198 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 A0A1W2PRV1 198 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 OR5B21A6NL26 309 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 AHRRA9YTQ3 701 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 FAM157AC9JC47 383 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 TIMM8AO60220 97 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 DEFA4P12838 97 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 COL8A2P25067 703 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 HLA-DRB3P79483 266 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 FAM27E3Q08E93 113 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 MSMPQ1L6U9 139 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 ZNF585BQ52M93 769 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 SPANXN5Q5MJ07 72 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 UTF1Q5T230 341 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 ZNF474Q6S9Z5 364 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 SAXO1Q8IYX7 474 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 H1FOOQ8IZA3 346 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 RHOVQ96L33 236 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 PLEKHF2Q9H8W4 249 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 HRNRQ86YZ3 2850 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 ZNF727A8MUV8 499 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 IGKV1-5P01602 117 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 SEC11BP0C7V7 166 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 G6PCP35575 357 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 FGF8P55075 233 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 RAB2AP61019 212 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 RPL30P62888 115 aaKnown RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 OR8G2PQ6IF36 304 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 C11orf53Q8IXP5 236 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 ZNF295-AS1Q8N0V1 137 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 DRAM1Q8N682 238 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 GINS3Q9BRX5 216 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 SCRT1Q9BWW7 348 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 CSMD2Q7Z408 3487 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 USP9XQ93008 2570 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 SH2D1BO14796 132 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 HAND1O96004 215 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 MRPL49Q13405 166 aaKnown RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 ADAM5Q6NVV9 412 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 OR2Z1Q8NG97 314 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 S100PBPQ96BU1 408 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 GGACTQ9BVM4 153 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 LYRM2Q9NU23 88 aaPredicted RBP7.95□□□□□ -1.14
CUX1-206ENST00000437600 RNF115Q9Y4L5 304 aa7.95□□□□□ -1.14
CUX1-206ENST00000437600 TNCP24821 2201 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 A0A1W2PPH5 198 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A10PA6NDY2 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A18PA6NE21 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A16PA6NEW6 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A20PA6NIJ5 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A8PA6NJQ4 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A7PA6NKC0 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 OR5H1A6NKK0 313 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A22PA8MWA6 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A12PA8MX19 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A5PA8MXJ8 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A23PA8MXZ1 464 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 UMAD1C9J7I0 102 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 C12orf77C9JDV5 145 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 TCAPO15273 167 aa7.94□□□□□ -1.14
CUX1-206ENST00000437600 RBMXL2O75526 392 aaKnown RBP7.94□□□□□ -1.14
CUX1-206ENST00000437600 FAM90A15PP0C7V4 464 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms