RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GPA33Q99795 319 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 AURKAIP1Q9NWT8 199 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 SFXN3Q9BWM7 321 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 IL36RNQ9UBH0 155 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 PITX3O75364 302 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 SURF2Q15527 256 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 ABHD14BQ96IU4 210 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 TBX15Q96SF7 602 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 IGHV3OR16-10A0A075B7F0 116 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 H7C2G1 150 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 DLX1P56177 255 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 CEBPEQ15744 281 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 PRSS54Q6PEW0 395 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 PHYHIPLQ96FC7 376 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF385AQ96PM9 386 aaKnown RBP10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 TIMP4Q99727 224 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 HDHD3Q9BSH5 251 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF385DQ9H6B1 395 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 ZFHX2Q9C0A1 2572 aaPredicted RBP10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 MUC15Q8N387 334 aa10.46□□□□□ -0.74
CCDC88A-207ENST00000436346 HYPMO75409 117 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 OR10D4PQ8NGN7 298 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 CXorf66Q5JRM2 361 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ZAR1Q86SH2 424 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 A0A0U1RQV5 110 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 RPL36A-HNRNPH2H7BZ11 118 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 HIST3H3Q16695 136 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 MIOXQ9UGB7 285 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ATP5G2Q06055 141 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 OR4D11Q8NGI4 311 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 LRRC3BQ96PB8 259 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 RCC2Q9P258 522 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 LOC105371242A0A075B767 164 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 GAPDHP04406 335 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 IL11P20809 199 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 RPL8P62917 257 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF501Q96CX3 271 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 TRAV8-7A0A075B6U6 113 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNHIT1O43257 154 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 SLC25A45Q8N413 288 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 TPRX1Q8N7U7 411 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ABHD1Q96SE0 405 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ADAP1O75689 374 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 IER3P46695 156 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 SNRPD3P62318 126 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ATP1A1-AS1Q5TC04 95 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM216AQ8WUB2 273 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 IGKV1D-16P01601 117 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 PGA4P0DJD7 388 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 PGA5P0DJD9 388 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 HIST1H1BP16401 226 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 LDLRAD3Q86YD5 345 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 ITLN1Q8WWA0 313 aa10.45□□□□□ -0.74
CCDC88A-207ENST00000436346 LAMTOR1Q6IAA8 161 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 RNF133Q8WVZ7 376 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 ANKRD20A5PA0PJZ0 165 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 CORTO00230 105 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 MGAT2Q10469 447 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 LYZL2Q7Z4W2 148 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 TMEM251Q8N6I4 163 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 SIAH2O43255 324 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 PDLIM4P50479 330 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 LRRC75AQ8NAA5 344 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 MS4A3Q96HJ5 214 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 hCG_38984A0A1B0GV85 526 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 GUCD1Q96NT3 240 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 SNRPCP09234 159 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 DLK1P80370 383 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 IGSF11Q5DX21 431 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 CALHM1Q8IU99 346 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 PRSS50Q9UI38 385 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 TAS2R60P59551 318 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 ZNF502Q8TBZ5 544 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 KLF9Q13886 244 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 FAM74A3Q4VXF1 159 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 NEURL2Q9BR09 285 aa10.44□□□□□ -0.74
CCDC88A-207ENST00000436346 CLDN34H7C241 214 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 DDB2Q92466 427 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 IGKV1-8A0A0C4DH67 115 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 MVDP53602 400 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 ZPLD1Q8TCW7 415 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 WNT2BQ93097 391 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 IL17BQ9UHF5 180 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 TMEM229AB2RXF0 380 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 HERPUD1Q15011 391 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 OVCH2Q7RTZ1 564 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 POM121Q96HA1 1249 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 RAX2Q96IS3 184 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 RTN4RQ9BZR6 473 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 HPRT1P00492 218 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 STARD6P59095 220 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 HMSDA8MTL9 139 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 S1PR2O95136 353 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 UNQ5815/PRO19632Q6UWF5 114 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 TCTEX1D1Q8N7M0 179 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 Q9N2K0 584 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 IFNL4K9M1U5 179 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 SLC25A17O43808 307 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 SIRT7Q9NRC8 400 aa10.43□□□□□ -0.74
CCDC88A-207ENST00000436346 A6NDN8 102 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms