RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 BEST4Q8NFU0 473 aa14.82□□□□□ -0.04
SHH-202ENST00000430104 SGMS2Q8NHU3 365 aa14.82□□□□□ -0.04
SHH-202ENST00000430104 RAB2BQ8WUD1 216 aa14.82□□□□□ -0.04
SHH-202ENST00000430104 RITA1Q96K30 269 aa14.82□□□□□ -0.04
SHH-202ENST00000430104 TET2Q6N021 2002 aaPredicted RBP14.82□□□□□ -0.04
SHH-202ENST00000430104 SMIM31A0A1B0GVY4 71 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 H7C2Y5 167 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 M0R1X1 148 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 PROP1O75360 226 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 DIRAS3O95661 229 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 APOA1P02647 267 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 CTXN2P0C2S0 81 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 CNTFRP26992 372 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 ACTBP60709 375 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 CENPVQ7Z7K6 275 aaPredicted RBP14.81□□□□□ -0.04
SHH-202ENST00000430104 HOGA1Q86XE5 327 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 Q8N9W7 124 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 AP3S1Q92572 193 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 RASL11BQ9BPW5 248 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 IFT46Q9NQC8 304 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 PLSCR3Q9NRY6 295 aa14.81□□□□□ -0.04
SHH-202ENST00000430104 CD28P10747 220 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 SOX6P35712 828 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 CBX5P45973 191 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 TMBIM6P55061 237 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 MMDQ15546 238 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 CMTM3Q96MX0 182 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 WNT10AQ9GZT5 417 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 SDHAF2Q9NX18 166 aa14.8□□□□□ -0.04
SHH-202ENST00000430104 PRSS3P35030 304 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 ANK2Q01484 3957 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 SLC35E3Q7Z769 313 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 SNX29P2Q8IUI4 249 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 ZNF383Q8NA42 475 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.79□□□□□ -0.04
SHH-202ENST00000430104 OR8H1Q8NGG4 311 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 LINC00527Q9UJ94 153 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 WASHC3Q9Y3C0 194 aa14.79□□□□□ -0.04
SHH-202ENST00000430104 CCDC160A6NGH7 325 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 OR5H14A6NHG9 310 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 LINC01548A6NM66 108 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 H0YJW9 148 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 FBXO24O75426 580 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 HLA-DQB1P01920 261 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 MC5RP33032 325 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 LUMP51884 338 aaPredicted RBP14.78□□□□□ -0.04
SHH-202ENST00000430104 OR5AU1Q8NGC0 362 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 C5orf30Q96GV9 206 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 NOL4LQ96MY1 436 aaPredicted RBP14.78□□□□□ -0.04
SHH-202ENST00000430104 LIN7CQ9NUP9 197 aaKnown RBP14.78□□□□□ -0.04
SHH-202ENST00000430104 OR2W1Q9Y3N9 320 aa14.78□□□□□ -0.04
SHH-202ENST00000430104 M0QZ24 198 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 NBR2O15453 112 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 RGS5O15539 181 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 APOA2P02652 100 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 C10orf99Q6UWK7 81 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 OR5AN1Q8NGI8 311 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 SNAPC3Q92966 411 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 ISOC1Q96CN7 298 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 BCL7BQ9BQE9 202 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 NECAP2Q9NVZ3 263 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 KIAA1456Q9P272 454 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 GAB2Q9UQC2 676 aa14.77□□□□□ -0.05
SHH-202ENST00000430104 H3BMQ9 156 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 FCGR2CP31995 323 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 RNASE12Q5GAN4 147 aaKnown RBP14.76□□□□□ -0.05
SHH-202ENST00000430104 FOXRED2Q8IWF2 684 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 FAM71E2Q8N5Q1 922 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 OR5AP2Q8NGF4 316 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 HSPB9Q9BQS6 159 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 SLC35D1Q9NTN3 355 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 EXTL2Q9UBQ6 330 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 CEPT1Q9Y6K0 416 aa14.76□□□□□ -0.05
SHH-202ENST00000430104 IGKV1D-13A0A0B4J2D9 117 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 CTDSP2O14595 271 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 IGHG2P01859 326 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 OR5H8P0DN80 308 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 IGKV1-13P0DP09 117 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 RPS16P62249 146 aaKnown RBP14.75□□□□□ -0.05
SHH-202ENST00000430104 CDK10Q15131 360 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 PLGLAQ15195 96 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 NSUN5P1Q3KNT7 163 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 ZNF329Q86UD4 541 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 DYNC2LI1Q8TCX1 351 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 WIPF2Q8TF74 440 aaPredicted RBP14.75□□□□□ -0.05
SHH-202ENST00000430104 CITED2Q99967 270 aaPredicted RBP14.75□□□□□ -0.05
SHH-202ENST00000430104 FBXL15Q9H469 300 aa14.75□□□□□ -0.05
SHH-202ENST00000430104 PSMB11A5LHX3 300 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 TUSC2O75896 110 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 PMP2P02689 132 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 AADACP22760 399 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 THBS3P49746 956 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 ZNF645Q8N7E2 425 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 BVESQ8NE79 360 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 NPBQ8NG41 125 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 MIXL1Q9H2W2 232 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 EHFQ9NZC4 300 aa14.74□□□□□ -0.05
SHH-202ENST00000430104 ZNF107Q9UII5 783 aaPredicted RBP14.74□□□□□ -0.05
SHH-202ENST00000430104 A0A1W2PRX2 142 aa14.73□□□□□ -0.05
SHH-202ENST00000430104 RBBP9O75884 186 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms