RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 XKRY2A2RUG3 117 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 FNDC10F2Z333 226 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 MPLP40238 635 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 CXCL12P48061 93 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 NUTF2P61970 127 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 CATR1Q13166 79 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PMS2CLQ68D20 193 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 TRAT1Q6PIZ9 186 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 P4HA3Q7Z4N8 544 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 FGFRL1Q8N441 504 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 NEK7Q8TDX7 302 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 NPCDR1Q9BY65 106 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF576Q9H609 170 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF703Q9H7S9 590 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A0G2JMM0 328 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1W2PPB8 328 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1W2PRS3 328 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 KIR3DP1A8MWS1 328 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 GYPAP02724 150 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 RFPL3SP0C7P2 107 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 RAB4AP20338 218 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 CYB561P49447 251 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 CNN1P51911 297 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ERVFC1-1P60608 527 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PLP2Q04941 152 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 Q0VFX4 171 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PDCD1Q15116 288 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ADIRFQ15847 76 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF766Q5HY98 468 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10P1Q8NGE3 313 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10G9Q8NGN4 311 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10G7Q8NGN6 311 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ABHD3Q8WU67 409 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 NANOS1Q8WY41 292 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 R3HDM4Q96D70 268 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 WDYHV1Q96HA8 205 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 TAAR6Q96RI8 345 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PRRG4Q9BZD6 226 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 DEPPQ9NTK1 212 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 CRIM1Q9NZV1 1036 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 IL36RNQ9UBH0 155 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 B4GALT7Q9UBV7 327 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 GAB2Q9UQC2 676 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 WDR83OSQ9Y284 106 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 TRBV9A0A0B4J1U6 114 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 UBE2L5PA0A1B0GUS4 154 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1B0GV90 55 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C5orf49A4QMS7 147 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 OOEPA6NGQ2 149 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 HS3ST1O14792 307 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 SH2D1BO14796 132 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 RBFOX2O43251 390 aaKnown RBP eCLIP4.82□□□□□ -1.642e-7■■■■■ 40.6
CCDC88A-203ENST00000412148 LILRA1O75019 489 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 SELLP14151 372 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 SELEP16581 610 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 CEBPGP53567 150 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 PAFAH1B2P68402 229 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF124Q15973 351 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 WIPI1Q5MNZ9 446 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 LINC01551Q86U37 167 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C11orf52Q96A22 123 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 MEGF10Q96KG7 1140 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 LURAP1Q96LR2 239 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 HSD17B10Q99714 261 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C20orf144Q9BQM9 153 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 DDA1Q9BW61 102 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 OR1A1Q9P1Q5 309 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 TMEM30CPA0ZSE6 113 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 IQCF6A8MYZ5 107 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C9JCJ5 164 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 IFNL4K9M1U5 179 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 ITGB1BP1O14713 200 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 TNFSF12O43508 249 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 TNFSF15O95150 251 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 OR2H2O95918 312 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 AREGP15514 252 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 GDF1P27539 372 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 OPRK1P41145 380 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 GAGE1Q13065 139 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 CR1LQ2VPA4 569 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 HLA-BQ31612 363 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 COX19Q49B96 90 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 SPANXN5Q5MJ07 72 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 FIP1L1Q6UN15 594 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C1orf174Q8IYL3 243 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 C1orf162Q8NEQ5 155 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 BCL2L2Q92843 193 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 APH1AQ96BI3 265 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 SPRY4Q9C004 299 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 NCOR1P1Q9H4R4 102 aa4.82□□□□□ -1.64
CCDC88A-203ENST00000412148 DOCK10Q96BY6 2186 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 ODAMA1E959 279 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 H3BP45 60 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 YPEL1O60688 119 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 MMP23AO75900 390 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 CD55P08174 381 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10J4P0C629 311 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 RAC2P15153 192 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10J1P30954 320 aa4.81□□□□□ -1.64
CCDC88A-203ENST00000412148 WNT5AP41221 380 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms