RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 Q96M66 194 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 CITED1Q99966 193 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 CLEC5AQ9NY25 188 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 FZR1Q9UM11 496 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 GZMBP10144 247 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 PSG2P11465 335 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 HLA-GP17693 338 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 IER3P46695 156 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 KIAA1644Q3SXP7 199 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 OR4X1Q8NH49 305 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM204Q9BSN7 226 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 CACNA1BQ00975 2339 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 ARHGAP21Q5T5U3 1957 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 IGSF23A1L1A6 192 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 SHISA7A6NL88 538 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 CSRP1P21291 193 aaKnown RBP10.27□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM187Q14656 261 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 AARDQ4LEZ3 155 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 BEND2Q8NDZ0 799 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 NEU1Q99519 415 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 ZFP30Q9Y2G7 519 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 FREM1Q5H8C1 2179 aa10.27□□□□□ -0.77
HMGB1-206ENST00000405805 RAC1P63000 192 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 NHLH1Q02575 133 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM164Q5U3C3 297 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 NUFIP2Q7Z417 695 aaKnown RBP10.26□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM251Q8N6I4 163 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 DMBX1Q8NFW5 382 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 OR10V1Q8NGI7 309 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 SRXN1Q9BYN0 137 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 GTSF1LQ9H1H1 148 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 M0R296 226 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 IGLV3-19P01714 112 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 GAPDHP04406 335 aaKnown RBP10.26□□□□□ -0.77
HMGB1-206ENST00000405805 GLIPR1P48060 266 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 AESQ08117 197 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 HLA-DRB5Q30154 266 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 GCNT2Q8N0V5 402 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 DEFB123Q8N688 67 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 OR2V1Q8NHB1 315 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 CDX2Q99626 313 aaPredicted RBP10.26□□□□□ -0.77
HMGB1-206ENST00000405805 TPPP3Q9BW30 176 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 QRFPP83859 136 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 TPRX1Q8N7U7 411 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 OR5D13Q8NGL4 314 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 DERL1Q9BUN8 251 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 GNG12Q9UBI6 72 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 DUSP13Q9UII6 198 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 CFAP54Q96N23 3096 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 SYNGR1O43759 233 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 NGFP01138 241 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 IFI6P09912 130 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 EGR1P18146 543 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 Q6ZVH6 145 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 OR8I2Q8N0Y5 310 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 OR4B1Q8NGF8 309 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 SGMS2Q8NHU3 365 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 KCNIP2Q9NS61 270 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 MTCH1Q9NZJ7 389 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 NAT8Q9UHE5 227 aa10.26□□□□□ -0.77
HMGB1-206ENST00000405805 ACACAQ13085 2346 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 SNAI2O43623 268 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 GYPAP02724 150 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 VDAC1P21796 283 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 ZNF818PQ6ZRF7 136 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 TUSC5Q8IXB3 177 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 CLDN23Q96B33 292 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 VAX2Q9UIW0 290 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 PTPRSQ13332 1948 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 SNURFLB1AK76 121 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 ISLRO14498 428 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 IGHMP01871 453 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 HS3ST3B1Q9Y662 390 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 TRDCB7Z8K6 153 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 NUDT3O95989 172 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 CRYAAP02489 173 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 ZNF17P17021 662 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 CEACAM6P40199 344 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 ELOBQ15370 118 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 ALKBH6Q3KRA9 238 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 TEX38Q6PEX7 206 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 SLC23A3Q6PIS1 610 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 OR5B3Q8NH48 314 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 OR2H1Q9GZK4 316 aa10.25□□□□□ -0.77
HMGB1-206ENST00000405805 HEYLQ9NQ87 328 aaPredicted RBP10.25□□□□□ -0.77
HMGB1-206ENST00000405805 M0R2Z0 102 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 RHBDL1O75783 438 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 RFPL3SP0C7P2 107 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 LIFP15018 202 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 EDDM3BP56851 147 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 RAC3P60763 192 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 RTP5Q14D33 572 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 DNM1P46Q6ZS02 220 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 NCOR1P1Q9H4R4 102 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 MANBALQ9NQG1 85 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 TMEM38BQ9NVV0 291 aa10.24□□□□□ -0.77
HMGB1-206ENST00000405805 BOKQ9UMX3 212 aaPredicted RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 ZNF891A8MT65 544 aaPredicted RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 RBM11P57052 281 aaKnown RBP10.24□□□□□ -0.77
HMGB1-206ENST00000405805 MRPL54Q6P161 138 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms