RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ACSF3Q4G176 576 aaPredicted RBP13.42□□□□□ -0.26
CKAP4-201ENST00000378026 BAGE3Q86Y29 109 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 BAGE2Q86Y30 109 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 ZDHHC16Q969W1 377 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 DNAJC4Q9NNZ3 241 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 TP53TG3Q9ULZ0 132 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 SLC25A6P12236 298 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 FKBP2P26885 142 aaKnown RBP13.42□□□□□ -0.26
CKAP4-201ENST00000378026 TPPP2P59282 170 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 GAGE1Q13065 139 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 MMDQ15546 238 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 TMEM183BQ1AE95 376 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 MCEMP1Q8IX19 187 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 LSM10Q969L4 123 aaKnown RBP13.42□□□□□ -0.26
CKAP4-201ENST00000378026 ZNF552Q9H707 407 aaPredicted RBP13.42□□□□□ -0.26
CKAP4-201ENST00000378026 ELOVL5Q9NYP7 299 aa13.42□□□□□ -0.26
CKAP4-201ENST00000378026 FRMD6-AS1P0C7T7 363 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 LIFP15018 202 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 KRTDAPP60985 99 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 NUFIP2Q7Z417 695 aaKnown RBP13.41□□□□□ -0.26
CKAP4-201ENST00000378026 FOXJ2Q9P0K8 574 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 USF3Q68DE3 2245 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 TRAV24A0A0B4J272 114 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 C5orf49A4QMS7 147 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 RAMP3O60896 148 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 LINC00614P0C842 121 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 KITLGP21583 273 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 RAB7AP51149 207 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 CARD18P57730 90 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 MRPL21Q7Z2W9 205 aaKnown RBP13.41□□□□□ -0.26
CKAP4-201ENST00000378026 REPIN1Q9BWE0 567 aaKnown RBP13.41□□□□□ -0.26
CKAP4-201ENST00000378026 RIMS4Q9H426 269 aaPredicted RBP13.41□□□□□ -0.26
CKAP4-201ENST00000378026 MDFIC2A0A1B0GVS7 189 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 SIRPB1O00241 398 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 ZG16O60844 167 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 VENTXO95231 258 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 IGLV3-19P01714 112 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 GLB1P16278 677 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 CRISP2P16562 243 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 DSCR4P56555 118 aaPredicted RBP13.41□□□□□ -0.26
CKAP4-201ENST00000378026 RABEPKQ7Z6M1 372 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 SLC25A45Q8N413 288 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 CPT1CQ8TCG5 803 aa13.41□□□□□ -0.26
CKAP4-201ENST00000378026 TRAV34A0A0B4J273 112 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 SLC17A3O00476 420 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 SPINK4O60575 86 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 WNT2P09544 360 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 CDC34P49427 236 aaPredicted RBP13.4□□□□□ -0.26
CKAP4-201ENST00000378026 FAM53AQ6NSI3 398 aaPredicted RBP13.4□□□□□ -0.26
CKAP4-201ENST00000378026 TMEM14EPQ6UXP3 125 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 ZNF808Q8N4W9 903 aaPredicted RBP13.4□□□□□ -0.26
CKAP4-201ENST00000378026 OR10P1Q8NGE3 313 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 SFRP2Q96HF1 295 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 NPCDR1Q9BY65 106 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 ZNF391Q9UJN7 358 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 F6UZH7 168 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 MLNRO43193 412 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 DKK1O94907 266 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 SERPINA7P05543 415 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 IL6RP08887 468 aaPredicted RBP13.4□□□□□ -0.26
CKAP4-201ENST00000378026 EDDM3BP56851 147 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 LINC00310P59036 64 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 TGFBR3Q03167 851 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 ZNF90Q03938 601 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 MSMO1Q15800 293 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 TMEM144Q7Z5S9 345 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 OR5AU1Q8NGC0 362 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 ABHD3Q8WU67 409 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 TUBG2Q9NRH3 451 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 RNF114Q9Y508 228 aa13.4□□□□□ -0.26
CKAP4-201ENST00000378026 NGFP01138 241 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 UMODP07911 640 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 COL8A2P25067 703 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 CHRNB4P30926 498 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 RAC1P63000 192 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 Q6ZVH6 145 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 OR5A2Q8NGI9 324 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 BTF3L4Q96K17 158 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 CIB3Q96Q77 187 aaPredicted RBP13.39□□□□□ -0.27
CKAP4-201ENST00000378026 C20orf144Q9BQM9 153 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 TMEM147Q9BVK8 224 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 TRAPPC2LQ9UL33 140 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A10PA6NDY2 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A18PA6NE21 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A16PA6NEW6 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A20PA6NIJ5 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A8PA6NJQ4 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A7PA6NKC0 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A22PA8MWA6 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A12PA8MX19 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A5PA8MXJ8 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A23PA8MXZ1 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 YPEL1O60688 119 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A15PP0C7V4 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A13PP0C7W8 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A14PP0C7W9 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 FAM90A24PP0C7X0 464 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 TRIM61Q5EBN2 209 aa13.39□□□□□ -0.27
CKAP4-201ENST00000378026 TEX43Q6ZNM6 134 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms