RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	PTBP1	P26599	531 aa	Known RBP eCLIP	11.28	□□□□□ -0.6	4e-6	■■■■■ 35.7
DDR1-225	ENST00000376568	ERP29	P30040	261 aa	Known RBP	11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	AKR1C8P	Q5T2L2	129 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	FOXL2NB	Q6ZUU3	175 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	ACOT7L	Q6ZUV0	252 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	DRAM1	Q8N682	238 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	FLYWCH2	Q96CP2	140 aa	Known RBP	11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	WSB1	Q9Y6I7	421 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	SHISA9	B4DS77	424 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	TSPAN9	O75954	239 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	KITLG	P21583	273 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	NCR3LG1	Q68D85	454 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	COLCA1	Q6ZS62	124 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	OR4A4P	Q8NGN8	299 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	NXF2	Q9GZY0	626 aa	Known RBP	11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	C5orf66	Q9H5L9	145 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	PFDN2	Q9UHV9	154 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	IGHV3OR16-13	A0A075B7E8	117 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	IGHV3-74	A0A0B4J1X5	117 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	SFT2D2	O95562	160 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	OR8U8	P0C7N1	319 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	OR13C7	P0DN81	318 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	ZNF250	P15622	560 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	ZNF324B	Q6AW86	544 aa	Predicted RBP	11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	MRPL30	Q8TCC3	161 aa	Known RBP	11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	HIF1AN	Q9NWT6	349 aa		11.28	□□□□□ -0.6
DDR1-225	ENST00000376568	ZFP92	A6NM28	416 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	S1PR2	O95136	353 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	DTYMK	P23919	212 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	KCNJ3	P48549	501 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	OPCML	Q14982	345 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	MIOX	Q9UGB7	285 aa		11.27	□□□□□ -0.6
DDR1-225	ENST00000376568	CHST1	O43916	411 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	RBP4	P02753	201 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	HTR1D	P28221	377 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	LCN15	Q6UWW0	184 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	SPSB4	Q96A44	273 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	PARP11	Q9NR21	331 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568		A0A0U1RQK1	487 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	TBP	P20226	339 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	OPRK1	P41145	380 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	OR11H7	Q8NGC8	314 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	OR13D1	Q8NGV5	346 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	RNF166	Q96A37	237 aa	Predicted RBP	11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	C14orf79	Q96F83	325 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	ZNF486	Q96H40	463 aa	Predicted RBP	11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	TP53RK	Q96S44	253 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	MARVELD1	Q9BSK0	173 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	IDI2-AS1	Q9NZ38	188 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	SSUH2	Q9Y2M2	353 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	ZNF835	Q9Y2P0	537 aa		11.27	□□□□□ -0.61
DDR1-225	ENST00000376568	ZNF320	A2RRD8	509 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	ANKRD55	Q3KP44	614 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	MBNL2	Q5VZF2	373 aa	Known RBP	11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	FBXL15	Q9H469	300 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	UBE2L5P	A0A1B0GUS4	154 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	C17orf98	A8MV24	154 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	RAB29	O14966	203 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	SLC31A2	O15432	143 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	IFNA7	P01567	189 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	RPL12	P30050	165 aa	Known RBP	11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	EFNA4	P52798	201 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	TMEM33	P57088	247 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	ZNF674	Q2M3X9	581 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	VMA21	Q3ZAQ7	101 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	PLEKHA3	Q9HB20	300 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	MMP26	Q9NRE1	261 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568		A0A1W2PPV4	95 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	GPR137B	O60478	399 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	MMP23A	O75900	390 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	IGHV3-23	P01764	117 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	SULT1A3	P0DMM9	295 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	SULT1A4	P0DMN0	295 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	F2R	P25116	425 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	C2orf68	Q2NKX9	166 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	ZNF561	Q8N587	486 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	COA4	Q9NYJ1	87 aa		11.26	□□□□□ -0.61
DDR1-225	ENST00000376568	ITPR3	Q14573	2671 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	PGLYRP1	O75594	196 aa	Predicted RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	CD276	Q5ZPR3	534 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	C1orf174	Q8IYL3	243 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	NEU4	Q8WWR8	484 aa	Predicted RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	RBPMS	Q93062	196 aa	Known RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	C2orf50	Q96LR7	162 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568		Q96MF0	132 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	TRBV23-1	A0A0A0MS06	115 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	IGLV1-44	P01699	117 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	IL5	P05113	134 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	SCAND1	P57086	179 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	CST9LP1	Q5W188	147 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	TMEM182	Q6ZP80	229 aa	Predicted RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	KIR3DL3	Q8N743	410 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	COQ2	Q96H96	371 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	GCN1	Q92616	2671 aa	Known RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	NUDT19	A8MXV4	375 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	MED6	O75586	246 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	CEACAM3	P40198	252 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	RAB7A	P51149	207 aa		11.25	□□□□□ -0.61
DDR1-225	ENST00000376568	RUSC1-AS1	Q66K80	236 aa		11.25	□□□□□ -0.61

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