RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GLIPR1P48060 266 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RPL31P62899 125 aaKnown RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 LCN2P80188 198 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 OR8B12Q8NGG6 310 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 OR52N1Q8NH53 320 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 DEFB104AQ8WTQ1 72 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 JAM3Q9BX67 310 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MBD1Q9UIS9 605 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 A0A0U1RQF3 1178 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 C11orf94C9JXX5 98 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ARNTLO00327 626 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 SOD1P00441 154 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 CD7P09564 240 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 LIMS3P0CW19 117 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 LIMS4P0CW20 117 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 SELENOWP63302 87 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ACVR1Q04771 509 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 IL13RA2Q14627 380 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 DCAF10Q5QP82 559 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 WFDC9Q8NEX5 89 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HGDQ93099 445 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 NUDT16L1Q9BRJ7 211 aaKnown RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RBM38Q9H0Z9 239 aaKnown RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 VCX2Q9H322 139 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ARHGAP23Q9P227 1491 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ODAMA1E959 279 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MMP23AO75900 390 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 YPEL5P62699 121 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RGNQ15493 299 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ASPHD2Q6ICH7 369 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 SH2D5Q6ZV89 423 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 GPHB5Q86YW7 130 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HSPB9Q9BQS6 159 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 CHST2Q9Y4C5 530 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 LOC107986453A0A1B0GWG9 222 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 B4GALT3O60512 393 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 UCNP55089 124 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 RPL27P61353 136 aaKnown RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SELENBP1Q13228 472 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 Q499Y3 187 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 LBHQ53QV2 105 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 PLAG1Q6DJT9 500 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 TIFABQ6ZNK6 161 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MEGF9Q9H1U4 602 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MAGIXQ9H6Y5 334 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 IGSF5Q9NSI5 407 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ARHGAP32A7KAX9 2087 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 DLG5Q8TDM6 1919 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SORL1Q92673 2214 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ALG1L2C9J202 215 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ZGLP1P0C6A0 271 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 HOXD13P35453 343 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SERF2P84101 59 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 C6orf226Q5I0X4 101 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MZB1Q8WU39 189 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 IGSF8Q969P0 613 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 KLRG1Q96E93 195 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ABHD1Q96SE0 405 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 TEX101Q9BY14 249 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SDF2L1Q9HCN8 221 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 IL20Q9NYY1 176 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 CISD1Q9NZ45 108 aaKnown RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 TDRD15B5MCY1 1934 aaKnown RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 TARM1B6A8C7 271 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SYNGR3O43761 229 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 CTAG1AP78358 180 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MRGPREQ86SM8 312 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 OR5C1Q8NGR4 320 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 FAM168AQ92567 244 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF107Q9UII5 783 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 OR51B2Q9Y5P1 312 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 DOCK4Q8N1I0 1966 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 IGLV3-22A0A075B6J6 115 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MUC21A0A0G2JKD1 596 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MUC21A0A140T8X8 626 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 F5H768 121 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 CD27P26842 260 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 FMODQ06828 376 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MUC21Q5SSG8 566 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 C9orf153Q5TBE3 101 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 BHLHA9Q7RTU4 235 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 NR2C2APQ86WQ0 139 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SIAH3Q8IW03 269 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 CA13Q8N1Q1 262 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 PARD6GQ9BYG4 376 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MRPL18Q9H0U6 180 aaKnown RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MMP25Q9NPA2 562 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SLC17A5Q9NRA2 495 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 NHP2Q9NX24 153 aaKnown RBP4.05□□□□□ -1.76
SCN1A-202ENST00000375405 MED29Q9NX70 200 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 ANKRD26Q9UPS8 1709 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV12-2A0A075B6T6 113 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SHISA8B8ZZ34 492 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 FHITP49789 147 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 HTR6P50406 440 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 SHISA5Q8N114 240 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 C4orf45Q96LM5 186 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 LOC105371242A0A075B767 164 aa4.05□□□□□ -1.76
SCN1A-202ENST00000375405 KCNE1BA0A087WTH5 132 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms