RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARR3P36575 388 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 FAM3BP58499 235 aaPredicted RBP13.8□□□□□ -0.2
SDC4-201ENST00000372733 USF2Q15853 346 aaPredicted RBP13.8□□□□□ -0.2
SDC4-201ENST00000372733 SSX2Q16385 188 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 Q3ZCU0 254 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 ZNF808Q8N4W9 903 aaPredicted RBP13.8□□□□□ -0.2
SDC4-201ENST00000372733 C2orf88Q9BSF0 95 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 TMEM147Q9BVK8 224 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 ZNF703Q9H7S9 590 aaPredicted RBP13.8□□□□□ -0.2
SDC4-201ENST00000372733 HSPB7Q9UBY9 170 aa13.8□□□□□ -0.2
SDC4-201ENST00000372733 FAM90A26D6RGX4 464 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 SYNGR4O95473 234 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 HOXA6P31267 233 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 GNB2P62879 340 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 ACTL10Q5JWF8 245 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 ZDHHC16Q969W1 377 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 C5orf30Q96GV9 206 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 DOCK10Q96BY6 2186 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 C1QTNF9BB2RNN3 333 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 RPL30P62888 115 aaKnown RBP13.79□□□□□ -0.2
SDC4-201ENST00000372733 SPINK9Q5DT21 86 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 PMS2CLQ68D20 193 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 DBX2Q6ZNG2 339 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 NUFIP2Q7Z417 695 aaKnown RBP13.79□□□□□ -0.2
SDC4-201ENST00000372733 OR2T10Q8NGZ9 312 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 WDFY4Q6ZS81 3184 aa13.79□□□□□ -0.2
SDC4-201ENST00000372733 ODAMA1E959 279 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 CHRNA7P36544 502 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 CEBPDP49716 269 aaPredicted RBP13.78□□□□□ -0.2
SDC4-201ENST00000372733 TRA2AQ13595 282 aaKnown RBP eCLIP13.78□□□□□ -0.2
SDC4-201ENST00000372733 OR2M7Q8NG81 312 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 ACY3Q96HD9 319 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 NDUFAF3Q9BU61 184 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 DDA1Q9BW61 102 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 MANBALQ9NQG1 85 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 AURKAIP1Q9NWT8 199 aaPredicted RBP13.78□□□□□ -0.2
SDC4-201ENST00000372733 ZG16O60844 167 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 EGR1P18146 543 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 PDLIM4P50479 330 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 OR1L1Q8NH94 360 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 CT55Q8WUE5 264 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 NOL4LQ96MY1 436 aaPredicted RBP13.78□□□□□ -0.2
SDC4-201ENST00000372733 OR2D2Q9H210 308 aa13.78□□□□□ -0.2
SDC4-201ENST00000372733 B4E171 279 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 EREGO14944 169 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 GGCTO75223 188 aaKnown RBP13.77□□□□□ -0.2
SDC4-201ENST00000372733 S1PR2O95136 353 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 IGHEP01854 428 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 SERPINA7P05543 415 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 SELEP16581 610 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 NPPCP23582 126 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 TSPAN7P41732 249 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 MAGEA5P43359 124 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 SCCPDHQ8NBX0 429 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 NEIL1Q96FI4 390 aaPredicted RBP13.77□□□□□ -0.2
SDC4-201ENST00000372733 DOCK11Q5JSL3 2073 aa13.77□□□□□ -0.2
SDC4-201ENST00000372733 PMS2P5A8MQ11 134 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 RNF212BA8MTL3 300 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 OR4A8P0C604 315 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 THOC3Q96J01 351 aaKnown RBP13.77□□□□□ -0.21
SDC4-201ENST00000372733 NPCDR1Q9BY65 106 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 C12orf49Q9H741 205 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 MBNL3Q9NUK0 354 aaKnown RBP13.77□□□□□ -0.21
SDC4-201ENST00000372733 OR6C3Q9NZP0 311 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 DNAJC13O75165 2243 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 NXPH2O95156 264 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 GCGP01275 180 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 CRYAAP02489 173 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 TIPARPQ7Z3E1 657 aaKnown RBP13.77□□□□□ -0.21
SDC4-201ENST00000372733 TGIF2LXQ8IUE1 241 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 MRPL41Q8IXM3 137 aaKnown RBP13.77□□□□□ -0.21
SDC4-201ENST00000372733 TDHQ8IZJ6 230 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 HLA-CQ95604 372 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 ANAPC16Q96DE5 110 aa13.77□□□□□ -0.21
SDC4-201ENST00000372733 USF3Q68DE3 2245 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 LRRC30A6NM36 301 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 NEURL1O76050 574 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 P0C879 139 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 COX5AP20674 150 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 MPLP40238 635 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 HOXA4Q00056 320 aaPredicted RBP13.76□□□□□ -0.21
SDC4-201ENST00000372733 MSMO1Q15800 293 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 FAM78BQ5VT40 261 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 BTNL3Q6UXE8 466 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 DTD1Q8TEA8 209 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 RTL8AQ9BWD3 113 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 TP53TG5Q9Y2B4 290 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 A0A1B0GUS0 222 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 C11orf94C9JXX5 98 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 CDIPTO14735 213 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 OR3A1P47881 315 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 MDP1Q86V88 176 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 ZNF645Q8N7E2 425 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 OR10P1Q8NGE3 313 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 TMEM18Q96B42 140 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 FAM173AQ9BQD7 235 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 WASF3Q9UPY6 502 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 SIT1Q9Y3P8 196 aa13.76□□□□□ -0.21
SDC4-201ENST00000372733 C17orf98A8MV24 154 aa13.75□□□□□ -0.21
SDC4-201ENST00000372733 MBP02144 154 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms