RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 LRRC10Q5BKY1 277 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 CXorf66Q5JRM2 361 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-202ENST00000372405 SLC51BQ86UW2 128 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 TAS2R3Q9NYW6 316 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 RPUSD1Q9UJJ7 312 aaKnown RBP11.34□□□□□ -0.59
PTPRF-202ENST00000372405 POMT1Q9Y6A1 747 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ITGB1BP1O14713 200 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ST8SIA3O43173 380 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 NDUFA2O43678 99 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 PITX3O75364 302 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 SPDEFO95238 335 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 CLDN1O95832 211 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 IFNA7P01567 189 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 NFYBP25208 207 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 DUTP33316 252 aaKnown RBP11.34□□□□□ -0.59
PTPRF-202ENST00000372405 LPAR6P43657 344 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 AVPI1Q5T686 147 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF66Q6ZN08 573 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ODF3L1Q8IXM7 274 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF843Q8N446 348 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 FAM216AQ8WUB2 273 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 TCTEX1D2Q8WW35 142 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 H1FXQ92522 213 aaKnown RBP11.34□□□□□ -0.59
PTPRF-202ENST00000372405 SPIN2AQ99865 258 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 SPIN2BQ9BPZ2 258 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ABHD14AQ9BUJ0 271 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 RAB9BQ9NP90 201 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 MALRD1Q5VYJ5 2156 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 RPS10-NUDT3A0A1W2PQS6 291 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 KANTRA0A1W2PQU2 76 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 KIAA1324LA8MWY0 1029 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-202ENST00000372405 RLN2P04090 185 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 EPHA1P21709 976 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 S100A1P23297 94 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 ID3Q02535 119 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 NCR3LG1Q68D85 454 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF841Q6ZN19 808 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 SPAG16Q8N0X2 631 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 PCNPQ8WW12 178 aaKnown RBP11.33□□□□□ -0.6
PTPRF-202ENST00000372405 LSM10Q969L4 123 aaKnown RBP11.33□□□□□ -0.6
PTPRF-202ENST00000372405 HSD17B10Q99714 261 aaKnown RBP11.33□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF251Q9BRH9 671 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 CYTL1Q9NRR1 136 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 ZNRD1Q9P1U0 126 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 AKAP6Q13023 2319 aa11.33□□□□□ -0.6
PTPRF-202ENST00000372405 A6NNC1 897 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 NXPH3O95157 252 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 P0C879 139 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 DLX6P56179 175 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 POLR2GP62487 172 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF816Q0VGE8 651 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 CATR1Q13166 79 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 SMCO1Q147U7 214 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ALKAL2Q6UX46 152 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 HEPN1Q6WQI6 88 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 OR8H3Q8N146 312 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ST8SIA2Q92186 375 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF714Q96N38 554 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ARPC5LQ9BPX5 153 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 MAGT1Q9H0U3 335 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 UBTD1Q9HAC8 227 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 UBQLN2Q9UHD9 624 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 SAA2-SAA4A0A096LPE2 208 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 A0A1B0GU03 582 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 E5RGE8 158 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 S1PR2O95136 353 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 SAA2P0DJI9 122 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 SLC25A6P12236 298 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 DAOP14920 347 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 RPL12P30050 165 aaKnown RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 CDKN1AP38936 164 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 NKX2-1P43699 371 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 GNG10P50151 68 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 BSCL2Q96G97 398 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF471Q9BX82 626 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 GAL3ST2Q9H3Q3 398 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 CACNG5Q9UF02 275 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 NSG2Q9Y328 171 aa11.32□□□□□ -0.6
PTPRF-202ENST00000372405 UTP20O75691 2785 aaKnown RBP11.32□□□□□ -0.6
PTPRF-202ENST00000372405 M0R1X1 148 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 NDUFS7O75251 213 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 TMEM50AO95807 157 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 RAB7AP51149 207 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 AKR1C2P52895 323 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 MRPS11P82912 194 aaKnown RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 TMEM30BQ3MIR4 351 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 TMEM155Q4W5P6 130 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 THOC7Q6I9Y2 204 aaKnown RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 SLC25A48Q6ZT89 311 aaKnown RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 NEU4Q8WWR8 484 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 FAM212BQ9NTI7 297 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 ZFP57Q9NU63 452 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 GAB2Q9UQC2 676 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 UBR5O95071 2799 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-202ENST00000372405 TACC2O95359 2948 aa11.31□□□□□ -0.6
PTPRF-202ENST00000372405 F5H0A9 414 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-202ENST00000372405 G6PCP35575 357 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 CLEC9AQ6UXN8 241 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 ZNF295-AS1Q8N0V1 137 aa11.3□□□□□ -0.6
PTPRF-202ENST00000372405 C11orf42Q8N5U0 333 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms