RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC25A6P12236 298 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 ZNF823P16415 610 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 DNASE1P24855 282 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 TALDO1P37837 337 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 SORDQ00796 357 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 GNMTQ14749 295 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 SGCAQ16586 387 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 MPV17LQ2QL34 196 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 TMEM182Q6ZP80 229 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 PUSL1Q8N0Z8 303 aaKnown RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 C12orf45Q8N5I9 185 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 NUP37Q8NFH4 326 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 SCARB1Q8WTV0 552 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 C15orf40Q8WUR7 153 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 CORO2AQ92828 525 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 PHF21AQ96BD5 680 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 PHYHIPLQ96FC7 376 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 IP6K3Q96PC2 410 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 MICU1Q9BPX6 476 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 ABHD14AQ9BUJ0 271 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 DNTTIP1Q9H147 329 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 OPN3Q9H1Y3 402 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 SH3BGRL3Q9H299 93 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 IFI27L2Q9H2X8 130 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 ELL3Q9HB65 397 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 RDH8Q9NYR8 311 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 BOKQ9UMX3 212 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 NOSIPQ9Y314 301 aaKnown RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 HSPB11Q9Y547 144 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.88□□□□□ -2.111e-6■■■■■ 30
VPS54-202ENST00000354504 FASNP49327 2511 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 A0A096LNT2 108 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TRGV5A0A0B4J1U4 118 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 LRP5LA4QPB2 252 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CENPXA8MT69 81 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TRDCB7Z8K6 153 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 NPIPA3F8WFD2 350 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 LY6LH3BQJ8 138 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ABCD4O14678 606 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 BET1O15155 118 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SLC31A2O15432 143 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DHFRP00374 187 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 HLA-AP01891 365 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR5AC1P0C628 307 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 RNF224P0DH78 156 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PGAM2P15259 253 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SERPINA2P20848 420 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PAX6P26367 422 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 BLVRBP30043 206 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 HTR5AP47898 357 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 RBP2P50120 134 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ZNF137PP52743 207 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 CCL20P78556 96 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TAF13Q15543 124 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TAF9Q16594 264 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 HFEQ30201 348 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FAM74A1Q5RGS3 127 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 C6orf183Q5T699 404 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 GGNBP1Q5YKI7 109 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 BATF2Q8N1L9 274 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FTMTQ8N4E7 242 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 JAGN1Q8N5M9 183 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SLC35G3Q8N808 338 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 UBAC2Q8NBM4 344 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR8G5Q8NG78 346 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 NPRL2Q8WTW4 380 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SNRNP40Q96DI7 357 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 GAFA1Q96PS6 74 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PRRT1Q99946 306 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 DEFB127Q9H1M4 99 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MED28Q9H204 178 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 NAA60Q9H7X0 242 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 PLEK2Q9NYT0 353 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MBD2Q9UBB5 411 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ST3GAL6Q9Y274 331 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 KLF13Q9Y2Y9 288 aaPredicted RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 MAB21L2Q9Y586 359 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 FBN3Q75N90 2809 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 HYDINQ4G0P3 5121 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 POLQO75417 2590 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 NOTCH3Q9UM47 2321 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MEX3AA1L020 520 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 IFITM10A6NMD0 228 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 C12orf77C9JDV5 145 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 LGALS8O00214 317 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TXNL1O43396 289 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 RP2O75695 350 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SCGNO76038 276 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR2F2O95006 317 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 GAPDHP04406 335 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 CBX5P45973 191 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SULT1A2P50226 295 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 GMFBP60983 142 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 MRPS15P82914 257 aaKnown RBP1.87□□□□□ -2.11
VPS54-202ENST00000354504 SCRN3Q0VDG4 424 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR2F1Q13607 317 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 TMEM14EPQ6UXP3 125 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 ACOT7LQ6ZUV0 252 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 OR5D13Q8NGL4 314 aa1.87□□□□□ -2.11
VPS54-202ENST00000354504 SLC25A40Q8TBP6 338 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms