RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CD74P04233 296 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 TAS2R19P59542 299 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 FXYD4P59646 89 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 MFSD4AQ8N468 514 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 TRIM63Q969Q1 353 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 SDHCQ99643 169 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-203ENST00000354098 NABP2Q9BQ15 211 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 TCF19Q9Y242 345 aa17.78■□□□□ 0.44
SHMT1-203ENST00000354098 FAM90A9PA6NNJ1 464 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 TXNL1O43396 289 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 IGLV2-14P01704 120 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 RNASE1P07998 156 aaKnown RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 SNRNP70P08621 437 aaKnown RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 CSF1P09603 554 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 CT45A6P0DMU7 189 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 CT45A5P0DMU8 189 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 CT45A7P0DMV0 189 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 TSPAN5P62079 268 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 HABP2Q14520 560 aaPredicted RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 ACTBL2Q562R1 376 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 RNASE10Q5GAN6 216 aaKnown RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 VAX1Q5SQQ9 334 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 FAM71F2Q6NXP2 309 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 FAAP20Q6NZ36 180 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 STEAP1BQ6NZ63 245 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 GLDNQ6ZMI3 551 aaPredicted RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 TMEM219Q86XT9 240 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 OR6F1Q8NGZ6 308 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 CAPSLQ8WWF8 208 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 AKIP1Q9NQ31 210 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 ZNF107Q9UII5 783 aaPredicted RBP17.77■□□□□ 0.44
SHMT1-203ENST00000354098 GAB2Q9UQC2 676 aa17.77■□□□□ 0.44
SHMT1-203ENST00000354098 ANKRD20A5PA0PJZ0 165 aa17.77■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF45Q02386 682 aa17.77■□□□□ 0.43
SHMT1-203ENST00000354098 C16orf87Q6PH81 154 aa17.77■□□□□ 0.43
SHMT1-203ENST00000354098 SECTM1Q8WVN6 248 aa17.77■□□□□ 0.43
SHMT1-203ENST00000354098 TAF15Q92804 592 aaKnown RBP eCLIP17.77■□□□□ 0.43
SHMT1-203ENST00000354098 A6NDX4 124 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 TRIM77I1YAP6 450 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 M0R1X1 148 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 RAB3DO95716 219 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 TBPP20226 339 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 BAK1Q16611 211 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 LINC00299Q6ZSB3 139 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 TMEM17Q86X19 198 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF645Q8N7E2 425 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.76■□□□□ 0.43
SHMT1-203ENST00000354098 FAM216AQ8WUB2 273 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 CCL28Q9NRJ3 127 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 TAS2R8Q9NYW2 309 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 C2CD3Q4AC94 2353 aa17.76■□□□□ 0.43
SHMT1-203ENST00000354098 GPR137BO60478 399 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 IGKV1D-33P01593 117 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 IGKV1-33P01594 117 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 RIPPLY3P57055 190 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 LSAMPQ13449 338 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 GDPD1Q8N9F7 314 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 MOB3AQ96BX8 217 aa17.75■□□□□ 0.43
SHMT1-203ENST00000354098 FAM181BA6NEQ2 426 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 CHST1O43916 411 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 IFNA6P05013 189 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 FAM106CPP0CH98 169 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 HERV-K104P61576 105 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 HES1Q14469 280 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 HNF4GQ14541 408 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 SLC5A7Q9GZV3 580 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 OR5H14A6NHG9 310 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF735P0CB33 412 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 AKAIN1P0CW23 69 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 CD1BP29016 333 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 THNSL2Q86YJ6 484 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF383Q8NA42 475 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 OR4C16Q8NGL9 310 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 GPHA2Q96T91 129 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 FXYD6Q9H0Q3 95 aa17.74■□□□□ 0.43
SHMT1-203ENST00000354098 AMY2AP04746 511 aa17.73■□□□□ 0.43
SHMT1-203ENST00000354098 KLF9Q13886 244 aaPredicted RBP17.73■□□□□ 0.43
SHMT1-203ENST00000354098 AADACL3Q5VUY0 350 aa17.73■□□□□ 0.43
SHMT1-203ENST00000354098 ARRDC1Q8N5I2 433 aa17.73■□□□□ 0.43
SHMT1-203ENST00000354098 EAF1Q96JC9 268 aaPredicted RBP17.73■□□□□ 0.43
SHMT1-203ENST00000354098 H0YJW9 148 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 GNRHRP30968 328 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 EBI3Q14213 229 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 ZNF818PQ6ZRF7 136 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 TOMM5Q8N4H5 51 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 OR5AN1Q8NGI8 311 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 RITA1Q96K30 269 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 PITPNC1Q9UKF7 332 aa17.72■□□□□ 0.43
SHMT1-203ENST00000354098 LINC00473A8K010 186 aa17.71■□□□□ 0.43
SHMT1-203ENST00000354098 SLC22A5O76082 557 aa17.71■□□□□ 0.43
SHMT1-203ENST00000354098 TMEM11P17152 192 aa17.71■□□□□ 0.43
SHMT1-203ENST00000354098 DUTP33316 252 aaKnown RBP17.71■□□□□ 0.43
SHMT1-203ENST00000354098 MEF2DQ14814 521 aa17.71■□□□□ 0.43
SHMT1-203ENST00000354098 LHFPL1Q86WI0 220 aa17.71■□□□□ 0.43
SHMT1-203ENST00000354098 TNFSF12O43508 249 aa17.71■□□□□ 0.42
SHMT1-203ENST00000354098 RPL30P62888 115 aaKnown RBP17.71■□□□□ 0.42
SHMT1-203ENST00000354098 EIF4EBP1Q13541 118 aaPredicted RBP17.71■□□□□ 0.42
SHMT1-203ENST00000354098 KRTAP24-1Q3LI83 254 aa17.71■□□□□ 0.42
SHMT1-203ENST00000354098 SCGB2B2Q4G0G5 96 aa17.71■□□□□ 0.42
SHMT1-203ENST00000354098 OR2T10Q8NGZ9 312 aa17.71■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms