RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 C15orf65H3BRN8 121 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 I3L521 148 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 NDUFS8O00217 210 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 SLC25A16P16260 332 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 PIGPP57054 158 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 ZNF816Q0VGE8 651 aaPredicted RBP7.53□□□□□ -1.2
USP4-202ENST00000351842 IZUMO4Q1ZYL8 232 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 AADACL3Q5VUY0 350 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 MOB3BQ86TA1 216 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 TMEM229BQ8NBD8 167 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 OR11H4Q8NGC9 324 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 OR13C8Q8NGS7 320 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 RNASE11Q8TAA1 199 aaKnown RBP7.53□□□□□ -1.2
USP4-202ENST00000351842 TNFRSF13BO14836 293 aaPredicted RBP7.53□□□□□ -1.2
USP4-202ENST00000351842 DVL1P1P54792 670 aaPredicted RBP7.53□□□□□ -1.2
USP4-202ENST00000351842 ZNF124Q15973 351 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 CT45A1Q5HYN5 189 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 TMEM65Q6PI78 240 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 ZNF818PQ6ZRF7 136 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 LDLRAD3Q86YD5 345 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 VKORC1L1Q8N0U8 176 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 OR4A4PQ8NGN8 299 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 TERB2Q8NHR7 220 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 CT45A3Q8NHU0 189 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 ABHD14AQ9BUJ0 271 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 VSIG4Q9Y279 399 aa7.53□□□□□ -1.2
USP4-202ENST00000351842 IGHV2-70DA0A0C4DH43 119 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 hCG_1809904A0A1W2PP81 198 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 A0A1W2PPE2 198 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 A0A1W2PR64 198 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 A0A1W2PRV1 198 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 KIAA1324LA8MWY0 1029 aaPredicted RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 APELAP0DMC3 54 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 LUMP51884 338 aaPredicted RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 LY6EQ16553 131 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 MORN2Q502X0 79 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 Q8N7P7 452 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 TCTEX1D2Q8WW35 142 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 C12orf57Q99622 126 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 C20orf85Q9H1P6 137 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 GSX1Q9H4S2 264 aaPredicted RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 MBNL3Q9NUK0 354 aaKnown RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 GFOD1Q9NXC2 390 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 COL6A5A8TX70 2615 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 IGHV2-26A0A0B4J1V2 119 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 RPS10-NUDT3A0A1W2PQS6 291 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 RAB19A4D1S5 217 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CA11O75493 328 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 RBMXL2O75526 392 aaKnown RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 SLC22A5O76082 557 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 IL5P05113 134 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 H2AFB2P0C5Z0 115 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CXCL3P19876 107 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 EPHA1P21709 976 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 KCNJ3P48549 501 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 MOB1BQ7L9L4 216 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 FOXRED2Q8IWF2 684 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 PRRT1Q99946 306 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 C14orf166Q9Y224 244 aaKnown RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 UBE2J1Q9Y385 318 aaPredicted RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 FAM96BQ9Y3D0 163 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 OR2W1Q9Y3N9 320 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 HSPB11Q9Y547 144 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 A0A1W2PPH5 198 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 ZNF729A6NN14 1252 aaPredicted RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 VWC2LB2RUY7 222 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 RNASEK-C17orf49H0YIS7 233 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 SMLR1H3BR10 107 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CCSO14618 274 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 OPN1MWP04001 364 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 OPN1MW2P0DN77 364 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 OPN1MW3P0DN78 364 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 SRP14P37108 136 aaKnown RBP7.52□□□□□ -1.21
USP4-202ENST00000351842 MEF2DQ14814 521 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 HMGN3Q15651 99 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 C21orf62-AS1Q17RA5 79 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CR1LQ2VPA4 569 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CLLU1Q5K131 121 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 GPR157Q5UAW9 335 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 C11orf88Q6PI97 169 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 ZNF680Q8NEM1 530 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 RPEQ96AT9 228 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 CHIAQ9BZP6 476 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 TMEM133Q9H2Q1 129 aa7.52□□□□□ -1.21
USP4-202ENST00000351842 SAA2-SAA4A0A096LPE2 208 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 SH2D7A6NKC9 451 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 LINC00587B1AMM8 73 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 SSNA1O43805 119 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 OR2A4O95047 310 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 HLA-AP01891 365 aaKnown RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 SAA2P0DJI9 122 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 IGHV4-31P0DP07 118 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 AKR1D1P51857 326 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 LOXL3P58215 753 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 DSCR9P59020 149 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 LGALSLQ3ZCW2 172 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 HEPN1Q6WQI6 88 aa7.51□□□□□ -1.21
USP4-202ENST00000351842 C1orf229Q6ZS94 237 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 BCL6BQ8N143 479 aaPredicted RBP7.51□□□□□ -1.21
USP4-202ENST00000351842 LINC01356Q8N9X3 169 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms