RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FOLR2P14207 255 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 AGAP20933 346 aa8.91□□□□□ -0.98
CCDC88A-202ENST00000336838 KIAA1671Q9BY89 1806 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 J3QRE1 110 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 MRPL52Q86TS9 123 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 OR2W5A6NFC9 320 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 VASH2Q86V25 355 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF501Q96CX3 271 aaPredicted RBP8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 FBLL1A6NHQ2 334 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 HRKO00198 91 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 EIF3GO75821 320 aaKnown RBP eCLIP8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 COL9A1P20849 921 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 LAMTOR1Q6IAA8 161 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 SPSB4Q96A44 273 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 J3QR06 171 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 RPL30P62888 115 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 Q1RN00 199 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 C9orf152Q5JTZ5 239 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 HARBI1Q96MB7 349 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 FGF5P12034 268 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 IER3P46695 156 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM187Q14656 261 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 FAM90A1Q86YD7 464 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 RFLNBQ8N5W9 214 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 APCDD1LQ8NCL9 501 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 PAXXQ9BUH6 204 aa8.9□□□□□ -0.98
CCDC88A-202ENST00000336838 A0A0G2JK05 382 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 SHISA8B8ZZ34 492 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 SPRY3O43610 288 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 DNLZQ5SXM8 178 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 FAM90A9PA6NNJ1 464 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 SPINT1O43278 529 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 PRKNO60260 465 aaPredicted RBP8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF25P17030 456 aaPredicted RBP8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 COL9A2Q14055 689 aaPredicted RBP8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 FAM219BQ5XKK7 198 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 C1QL4Q86Z23 238 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 PXMP4Q9Y6I8 212 aa8.9□□□□□ -0.99
CCDC88A-202ENST00000336838 TMEM251Q8N6I4 163 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 F8VVB4 439 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 F8VWA3 439 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 FABP2P12104 132 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 Q8WTZ3 238 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 TBX15Q96SF7 602 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 HIGD1AQ9Y241 93 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 ZNF146Q15072 292 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 SCNM1Q9BWG6 230 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 IGKV3-11P04433 115 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 IGHV4-34P06331 123 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 IBA57Q5T440 356 aaKnown RBP8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 VWA1Q6PCB0 445 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 SELENOHQ8IZQ5 122 aaKnown RBP8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 CT55Q8WUE5 264 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 CDX2Q99626 313 aaPredicted RBP8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 LINC00470Q9BZP3 86 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 SRD5A3Q9H8P0 318 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 DTX4Q9Y2E6 619 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 PIN1P1O15428 100 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 PPP1R17O96001 155 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 MT-CO3P00414 261 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 DYRK2Q92630 601 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 ROS1P08922 2347 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 A0A0B4J293 547 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 MARCH11A6NNE9 402 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 HYPMO75409 117 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 TGIF2LXQ8IUE1 241 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 VCX2Q9H322 139 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 DLL1O00548 723 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 EML2O95834 649 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 CAMPP49913 170 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 CRYBA2P53672 197 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 Q6AWC8 147 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 TUSC5Q8IXB3 177 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 C5orf17Q8NAS9 161 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 ABHD3Q8WU67 409 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 ONECUT1Q9UBC0 465 aa8.89□□□□□ -0.99
CCDC88A-202ENST00000336838 CDIPTO14735 213 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 HIST1H2BAQ96A08 127 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 SH3BGRL2Q9UJC5 107 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 TMEM54Q969K7 222 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 GNG7O60262 68 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 TRGC2P03986 189 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 OR8B3Q8NGG8 313 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 BLNKQ8WV28 456 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 OR8B2Q96RD0 313 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 MS4A5Q9H3V2 200 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 TRAV30A0A087WSZ9 112 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 MOSPD3O75425 235 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 CYP2G1PQ6ZSU1 146 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 MYOZ3Q8TDC0 251 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 PAM16Q9Y3D7 125 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 ZGRF1Q86YA3 2104 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 NCOA6Q14686 2063 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 OR4X1Q8NH49 305 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 G6PCP35575 357 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 MGAT2Q10469 447 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 OR4A47Q6IF82 309 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 GFRALQ6UXV0 394 aa8.88□□□□□ -0.99
CCDC88A-202ENST00000336838 DEFB108BQ8NET1 73 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms