RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CCSO14618 274 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 HEXAP06865 529 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 PI3P19957 117 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 CEACAM6P40199 344 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 GNB2P62879 340 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 SRSF4Q08170 494 aaKnown RBP8.29□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF660Q6AZW8 331 aaPredicted RBP8.29□□□□□ -1.08
HMGB3-201ENST00000325307 WDR73Q6P4I2 378 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 OR52L2PQ8NGH6 319 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 OR10V1Q8NGI7 309 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 C2orf88Q9BSF0 95 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 PIMREGQ9BSJ6 248 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 C5orf66Q9H5L9 145 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 POLQO75417 2590 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 PHF1O43189 567 aaPredicted RBP8.29□□□□□ -1.08
HMGB3-201ENST00000325307 MED6O75586 246 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 PPYP01298 95 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 FOLR2P14207 255 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 S100A11P31949 105 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 BMI1P35226 326 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 DEFA6Q01524 100 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 DHRS11Q6UWP2 260 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 LYG2Q86SG7 212 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 C12orf45Q8N5I9 185 aaPredicted RBP8.29□□□□□ -1.08
HMGB3-201ENST00000325307 OR5M8Q8NGP6 311 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 SECTM1Q8WVN6 248 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 SCGB3A2Q96PL1 93 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 SSX3Q99909 188 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 RAB9BQ9NP90 201 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 MALRD1Q5VYJ5 2156 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 TRBV6-7A0A0A0MS04 114 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 FCN3O75636 299 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 SCGB1D2O95969 90 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 WNT2P09544 360 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF728P0DKX0 622 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 NFYBP25208 207 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 CABLES2Q9BTV7 478 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 PATZ1Q9HBE1 687 aaKnown RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 C14orf166Q9Y224 244 aaKnown RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 LINC00312Q9Y6C7 94 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 H7C2Y5 167 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 AKR1C4P17516 323 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 PPP1CCP36873 323 aaKnown RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 SUPT4H1P63272 117 aaKnown RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 MEF2CQ06413 473 aaPredicted RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 UQCC3Q6UW78 93 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 PDZD9Q8IXQ8 264 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 MITD1Q8WV92 249 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 RTBDNQ9BSG5 229 aaPredicted RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 GAL3ST2Q9H3Q3 398 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 LPAR3Q9UBY5 353 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 KBTBD11-OT1A0A1B0GTJ5 212 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 IGHV3-7P01780 117 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 CCL3L1P16619 93 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 PAX6P26367 422 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 GNMTQ14749 295 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 ABCA11PQ4W5N1 156 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 WDR25Q64LD2 544 aaPredicted RBP8.28□□□□□ -1.08
HMGB3-201ENST00000325307 TMEM200BQ69YZ2 307 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 GLYATL2Q8WU03 294 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF714Q96N38 554 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 KCNS2Q9ULS6 477 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 GPR132Q9UNW8 380 aa8.28□□□□□ -1.08
HMGB3-201ENST00000325307 C15orf65H3BRN8 121 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 FPR2P25090 351 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 GUCA2BQ16661 112 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 FAM53AQ6NSI3 398 aaPredicted RBP8.27□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF841Q6ZN19 808 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 TMUB2Q71RG4 321 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 H1FOOQ8IZA3 346 aaPredicted RBP8.27□□□□□ -1.08
HMGB3-201ENST00000325307 ASB13Q8WXK3 278 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 MOB3AQ96BX8 217 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 SSBP3Q9BWW4 388 aaPredicted RBP8.27□□□□□ -1.08
HMGB3-201ENST00000325307 SLC5A7Q9GZV3 580 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 PRR13Q9NZ81 148 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 UBE2J1Q9Y385 318 aaPredicted RBP8.27□□□□□ -1.08
HMGB3-201ENST00000325307 OR2W1Q9Y3N9 320 aa8.27□□□□□ -1.08
HMGB3-201ENST00000325307 ARPC5O15511 151 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 HLA-GP17693 338 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 CD34P28906 385 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 ECI1P42126 302 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 PRAMEF5Q5TYX0 476 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 TCF23Q7RTU1 214 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 FBN2P35556 2912 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 J3KRW8 73 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 ATG12O94817 140 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 OR8U9P0C7N5 309 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 PHLDA2Q53GA4 152 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 LBHQ53QV2 105 aaPredicted RBP8.27□□□□□ -1.09
HMGB3-201ENST00000325307 FAHD2BQ6P2I3 314 aaPredicted RBP8.27□□□□□ -1.09
HMGB3-201ENST00000325307 OR8U1Q8NH10 309 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 FAHD2AQ96GK7 314 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 FXYD6Q9H0Q3 95 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 NAV2Q8IVL1 2488 aa8.27□□□□□ -1.09
HMGB3-201ENST00000325307 HSD17B6O14756 317 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 TAGLN2P37802 199 aaKnown RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 LUMP51884 338 aaPredicted RBP8.26□□□□□ -1.09
HMGB3-201ENST00000325307 C17orf58Q2M2W7 97 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 C9orf152Q5JTZ5 239 aa8.26□□□□□ -1.09
HMGB3-201ENST00000325307 CLDND2Q8NHS1 167 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms