RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RBKSQ9H477 322 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PQM1 296 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 DLL1O00548 723 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 EML2O95834 649 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 PEX11BO96011 259 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 OR11H12B2RN74 326 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 OR11H1Q8NG94 326 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 OR11H2Q8NH07 326 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 A0A0U1RQV5 110 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 TSPAN2O60636 221 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 GFRA1P56159 465 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 HMGCLL1Q8TB92 370 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 SLC25A10Q9UBX3 287 aaPredicted RBP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 FAM90A26D6RGX4 464 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 KLK10O43240 276 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 ZNF205O95201 554 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 ARRDC1-AS1Q9H2J1 176 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 FLRT3Q9NZU0 649 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 ERVH48-1M5A8F1 160 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 TINAGQ9UJW2 476 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 MRPS18BQ9Y676 258 aaKnown RBP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 PRSS12P56730 875 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 LOXL3P58215 753 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 TNFRSF19Q9NS68 423 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 DOCK1Q14185 1865 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 DOCK5Q9H7D0 1870 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 DANCRP0C864 163 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 RPS11P62280 158 aaKnown RBP eCLIP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 PSMG4Q5JS54 123 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 CA1P00915 261 aaPredicted RBP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 FSTP19883 344 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 SPAG8Q99932 426 aaPredicted RBP12.05□□□□□ -0.48
CSPG4-201ENST00000308508 DOCK9Q9BZ29 2069 aa12.05□□□□□ -0.48
CSPG4-201ENST00000308508 IGHV3-21A0A0B4J1V1 117 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 NDUFS8O00217 210 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 RNFT1Q5M7Z0 435 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 HBBP68871 147 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 NHLRC3Q5JS37 347 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 RHBDD2Q6NTF9 364 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 FADS6Q8N9I5 356 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 ALKBH7Q9BT30 221 aaPredicted RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 AICDAQ9GZX7 198 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 BIVMQ86UB2 503 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 ZNF430Q9H8G1 570 aaPredicted RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PRD5 423 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PRF3 423 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PRM7 423 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 PGPA6NDG6 321 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 C1QL1O75973 258 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 MC5RP33032 325 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 COL10A1Q03692 680 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 ANKRD33Q7Z3H0 272 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 ZCCHC14Q8WYQ9 949 aaKnown RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 GPR82Q96P67 336 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 DERL1Q9BUN8 251 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 ARAP2Q8WZ64 1704 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 CFDP00746 253 aaPredicted RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 RND3P61587 244 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 RPL31P62899 125 aaKnown RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 CX3CL1P78423 397 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 LINC00470Q9BZP3 86 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 DNAJC4Q9NNZ3 241 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 FXYD3Q14802 87 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 PKD1L3Q7Z443 1732 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 PTP4A3O75365 173 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 MBNL2Q5VZF2 373 aaKnown RBP12.04□□□□□ -0.48
CSPG4-201ENST00000308508 OR4D11Q8NGI4 311 aa12.04□□□□□ -0.48
CSPG4-201ENST00000308508 SSTR5P35346 364 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 ZIC1Q15915 447 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 C8orf82Q6P1X6 216 aaPredicted RBP12.03□□□□□ -0.48
CSPG4-201ENST00000308508 BTAF1O14981 1849 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 GRIFINA4D1Z8 144 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 HIST1H2BAQ96A08 127 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 PLSCR2Q9NRY7 297 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 INO80CQ6PI98 192 aaPredicted RBP12.03□□□□□ -0.48
CSPG4-201ENST00000308508 SRSF12Q8WXF0 261 aaKnown RBP12.03□□□□□ -0.48
CSPG4-201ENST00000308508 RTTNQ86VV8 2226 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM160Q9NX00 188 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 SPINK14Q6IE38 97 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 RECKO95980 971 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 RPL27AP46776 148 aaKnown RBP12.03□□□□□ -0.48
CSPG4-201ENST00000308508 RPL8P62917 257 aaKnown RBP12.03□□□□□ -0.48
CSPG4-201ENST00000308508 SIGLEC14Q08ET2 396 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 CYB5R2Q6BCY4 276 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 GUSBP11Q6P575 273 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 GPBAR1Q8TDU6 330 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 GSN-AS1Q9NRJ2 163 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 CLDN16Q9Y5I7 305 aa12.03□□□□□ -0.48
CSPG4-201ENST00000308508 GCM2O75603 506 aaPredicted RBP12.02□□□□□ -0.48
CSPG4-201ENST00000308508 ZDHHC8Q9ULC8 765 aa12.02□□□□□ -0.48
CSPG4-201ENST00000308508 GDF9O60383 454 aa12.02□□□□□ -0.48
CSPG4-201ENST00000308508 BCORQ6W2J9 1755 aa12.02□□□□□ -0.48
CSPG4-201ENST00000308508 MMD2Q8IY49 270 aa12.02□□□□□ -0.48
CSPG4-201ENST00000308508 DDB2Q92466 427 aa12.02□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PPC1 479 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 VENTXO95231 258 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 MYF5P13349 255 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 PSG6Q00889 435 aa12.02□□□□□ -0.49
CSPG4-201ENST00000308508 IGHV3OR15-7A0A075B7D8 119 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms