RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RIF1Q5UIP0 2472 aaKnown RBP16.6■□□□□ 0.25
USP48-201ENST00000308271 CHRNB4P30926 498 aa16.6■□□□□ 0.25
USP48-201ENST00000308271 Q56UQ5 140 aa16.6■□□□□ 0.25
USP48-201ENST00000308271 PDPNQ86YL7 162 aa16.6■□□□□ 0.25
USP48-201ENST00000308271 DLL3Q9NYJ7 618 aa16.6■□□□□ 0.25
USP48-201ENST00000308271 HIST1H1EP10412 219 aaKnown RBP16.59■□□□□ 0.25
USP48-201ENST00000308271 MAP1LC3CQ9BXW4 147 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 MGAMO43451 1857 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 SPRY3O43610 288 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 HPRT1P00492 218 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 NPBWR2P48146 333 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 MEOX1P50221 254 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 DMWDQ09019 674 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 IZUMO4Q1ZYL8 232 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 QTRT1Q9BXR0 403 aaKnown RBP16.59■□□□□ 0.25
USP48-201ENST00000308271 SPNS3Q6ZMD2 512 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 C18orf12Q96KH6 178 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 PRDM14Q9GZV8 571 aa16.59■□□□□ 0.25
USP48-201ENST00000308271 IGHV5-10-1A0A0J9YXX1 117 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 HERPUD1Q15011 391 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 ZNF766Q5HY98 468 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 TMEM54Q969K7 222 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 FREM3P0C091 2139 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 K7ERU9 68 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 SYNGR1O43759 233 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 SMPD2O60906 423 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 IGHV3-13P01766 116 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 IGHV3-7P01780 117 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 SUPT4H1P63272 117 aaKnown RBP16.58■□□□□ 0.25
USP48-201ENST00000308271 LRRC75BQ2VPJ9 315 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 ZNF645Q8N7E2 425 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 PKIBQ9C010 78 aa16.58■□□□□ 0.25
USP48-201ENST00000308271 CNOT1A5YKK6 2376 aaKnown RBP16.58■□□□□ 0.24
USP48-201ENST00000308271 RAB29O14966 203 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 LYZL6O75951 148 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 PCP4P48539 62 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 MFAP2P55001 183 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 AESQ08117 197 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 SPINK14Q6IE38 97 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 OR8I2Q8N0Y5 310 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 BLNKQ8WV28 456 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 WFIKKN1Q96NZ8 548 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 SPSB2Q99619 263 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 TMEM56-RWDD3S4R434 201 aa16.58■□□□□ 0.24
USP48-201ENST00000308271 HES1Q14469 280 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 ALKBH6Q3KRA9 238 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 ZADH2Q8N4Q0 377 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 OR4X1Q8NH49 305 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 WASHC3Q9Y3C0 194 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 A0A1W2PN81 502 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 TMEM251Q8N6I4 163 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 CCL1P22362 96 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 VSTM2AQ8TAG5 236 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 RSPO3Q9BXY4 272 aaPredicted RBP16.57■□□□□ 0.24
USP48-201ENST00000308271 MRPL13Q9BYD1 178 aaKnown RBP16.57■□□□□ 0.24
USP48-201ENST00000308271 TDRD6O60522 2096 aaKnown RBP16.57■□□□□ 0.24
USP48-201ENST00000308271 JOSD1Q15040 202 aaPredicted RBP16.57■□□□□ 0.24
USP48-201ENST00000308271 GABRA6Q16445 453 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 ARSJQ5FYB0 599 aaPredicted RBP16.57■□□□□ 0.24
USP48-201ENST00000308271 LRTM2Q8N967 370 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 SH3BGRL2Q9UJC5 107 aa16.57■□□□□ 0.24
USP48-201ENST00000308271 A0A0A6YYD4 124 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 TRAV38-1A0A0B4J264 116 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 IGKV1-9A0A0C4DH69 117 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 OR2H2O95918 312 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 SFRP2Q96HF1 295 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 TCFL5Q9UL49 500 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 TRBV9A0A0B4J1U6 114 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 CLDN14O95500 239 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 P01737 135 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 ABHD14AQ9BUJ0 271 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 FOXD3Q9UJU5 478 aaPredicted RBP16.56■□□□□ 0.24
USP48-201ENST00000308271 A0A1B0GW64 132 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 BMPR1BO00238 502 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 STXBP6Q8NFX7 210 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 WNT5BQ9H1J7 359 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 FZR1Q9UM11 496 aa16.56■□□□□ 0.24
USP48-201ENST00000308271 HBZP02008 142 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 SAP30LQ9HAJ7 183 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 ZNF355PQ9NSJ1 428 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 EP300Q09472 2414 aaPredicted RBP16.55■□□□□ 0.24
USP48-201ENST00000308271 NCOR1O75376 2440 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 TNFRSF1AP19438 455 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 OR2D3Q8NGH3 330 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 WFDC1Q9HC57 220 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 hADV38S2A0JD32 116 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 GRIFINA4D1Z8 144 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 HIST3H2BBQ8N257 126 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 NFAM1Q8NET5 270 aaPredicted RBP16.55■□□□□ 0.24
USP48-201ENST00000308271 OR4F17Q8NGA8 305 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 SLC25A40Q8TBP6 338 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 PPP1R14DQ9NXH3 145 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 HSPB8Q9UJY1 196 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 HINT1P49773 126 aaPredicted RBP16.55■□□□□ 0.24
USP48-201ENST00000308271 AAMDCQ9H7C9 122 aa16.55■□□□□ 0.24
USP48-201ENST00000308271 ZG16O60844 167 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 FGF5P12034 268 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 ORM2P19652 201 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 SLC35B1P78383 322 aa16.54■□□□□ 0.24
USP48-201ENST00000308271 ARL16Q0P5N6 197 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms