RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CT55Q8WUE5 264 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 RAB37Q96AX2 223 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 QSER1Q2KHR3 1735 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF735P0CB33 412 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 SPANXN1Q5VSR9 72 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 SLC25A47Q6Q0C1 308 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 OR1N2Q8NGR9 330 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 OR2J1Q9GZK6 312 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 G6PC2Q9NQR9 355 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 CEACAM18A8MTB9 384 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 HLA-DRB1P01911 266 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 INO80CQ6PI98 192 aaPredicted RBP14.98□□□□□ -0.01
SYNPO-201ENST00000307662 INSIG2Q9Y5U4 225 aa14.98□□□□□ -0.01
SYNPO-201ENST00000307662 RBPMS2Q6ZRY4 209 aaKnown RBP14.97□□□□□ -0.01
SYNPO-201ENST00000307662 DOCK5Q9H7D0 1870 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 J3KRW8 73 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 CTAG1AP78358 180 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 ATRAIDQ6UW56 229 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 ASCL5Q7RTU5 278 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 MDP1Q86V88 176 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 SFRP2Q96HF1 295 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 TCFL5Q9UL49 500 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 IGHV3OR15-7A0A075B7D8 119 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 A0A1W2PPE3 182 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 GCSHP23434 173 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 FXYD3Q14802 87 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 SP7Q8TDD2 431 aaPredicted RBP14.97□□□□□ -0.01
SYNPO-201ENST00000307662 FOXJ2Q9P0K8 574 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 COL11A2P13942 1736 aaPredicted RBP14.97□□□□□ -0.01
SYNPO-201ENST00000307662 TSPAN2O60636 221 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 IFI6P09912 130 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 LINC00869P0C866 280 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 ARL14EPLP0DKL9 152 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 LINC00469Q8N7U9 141 aa14.97□□□□□ -0.01
SYNPO-201ENST00000307662 LOC107984156A0A0G2JMH3 177 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF729A6NN14 1252 aaPredicted RBP14.96□□□□□ -0.01
SYNPO-201ENST00000307662 TMEM14DPA8MWL7 114 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 CLDN14O95500 239 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 PRDX2P32119 198 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 LINC01590Q5TEZ4 76 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 ARL17AQ8IVW1 177 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 OR8G5Q8NG78 346 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 OR2I1PQ8NGU4 316 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 ZNF502Q8TBZ5 544 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 SPSB4Q96A44 273 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 LINC00587B1AMM8 73 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 OTX1P32242 354 aaPredicted RBP14.96□□□□□ -0.01
SYNPO-201ENST00000307662 SELENOTP62341 195 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 LRRC75BQ2VPJ9 315 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 APELAP0DMC3 54 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 TNFRSF9Q07011 255 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 FBXW9Q5XUX1 488 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 MMD2Q8IY49 270 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 OR5R1Q8NH85 324 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 MARS2Q96GW9 593 aaKnown RBP14.96□□□□□ -0.01
SYNPO-201ENST00000307662 SMIM8Q96KF7 97 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 Q96M66 194 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 PMCHL2Q9BQD1 86 aa14.96□□□□□ -0.01
SYNPO-201ENST00000307662 DHRS7CA6NNS2 312 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 UCP3P55916 312 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 CYB5R2Q6BCY4 276 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 WDR31Q8NA23 367 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 RND1Q92730 232 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 GUCD1Q96NT3 240 aa14.96□□□□□ -0.02
SYNPO-201ENST00000307662 IGHV3-21A0A0B4J1V1 117 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 OR2H2O95918 312 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 CKS2P33552 79 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 PSMG3Q9BT73 122 aaPredicted RBP14.95□□□□□ -0.02
SYNPO-201ENST00000307662 PILRAQ9UKJ1 303 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 SHANK3Q9BYB0 1731 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 TMEM250H0YL14 139 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 BTF3P20290 206 aaKnown RBP14.95□□□□□ -0.02
SYNPO-201ENST00000307662 MAS1LP35410 378 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 SOX8P57073 446 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 UNC119Q13432 240 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 KIAA1644Q3SXP7 199 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 RAB1CQ92928 201 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 TMEM208Q9BTX3 173 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 LHFPL6Q9Y693 200 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 C2orf68Q2NKX9 166 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 ERASQ7Z444 233 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 SFTPA2Q8IWL1 248 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 MAFAQ8NHW3 353 aaPredicted RBP14.95□□□□□ -0.02
SYNPO-201ENST00000307662 PGLYRP4Q96LB8 373 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 C1RLQ9NZP8 487 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 VENTXO95231 258 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 ERVFRD-1P60508 538 aa14.95□□□□□ -0.02
SYNPO-201ENST00000307662 A0A0J9YW62 118 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 CRXO43186 299 aaPredicted RBP14.94□□□□□ -0.02
SYNPO-201ENST00000307662 ATOH7Q8N100 152 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 SCNM1Q9BWG6 230 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 HSPB7Q9UBY9 170 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 KCNMB2Q9Y691 235 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 OR8B2Q96RD0 313 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 ZDHHC8Q9ULC8 765 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 MIA3Q5JRA6 1907 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 A0A0G2JK05 382 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 A0A1W2PRD5 423 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 A0A1W2PRF3 423 aa14.94□□□□□ -0.02
SYNPO-201ENST00000307662 A0A1W2PRM7 423 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms