RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 BAG2O95816 211 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 CPEP16870 476 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 PSG5Q15238 335 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 RPL39P5Q59GN2 51 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 Q8N402 240 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 ZNF485Q8NCK3 441 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 OR9G4Q8NGQ1 327 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 FAM46BQ96A09 425 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 TMEM68Q96MH6 324 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 DERL3Q96Q80 235 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 CLCC1Q96S66 551 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 FAM103A1Q9BTL3 118 aaKnown RBP11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 RIMS4Q9H426 269 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 CHMP1AQ9HD42 196 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 SIGLEC8Q9NYZ4 499 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 CLEC2DQ9UHP7 191 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 MGAT4AQ9UM21 535 aa11.29□□□□□ -0.6
CCDC88B-201ENST00000301897 A0A1W2PPK0 400 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 CA2P00918 260 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 CD1AP06126 327 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 AADACP22760 399 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 FXYD3Q14802 87 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 GLDNQ6ZMI3 551 aaPredicted RBP11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 SVOPQ8N4V2 548 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 GRPEL2Q8TAA5 225 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 TMEM80Q96HE8 168 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 CYYR1Q96J86 154 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 SULT4A1Q9BR01 284 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 AGMATQ9BSE5 352 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 TMED9Q9BVK6 235 aa11.28□□□□□ -0.6
CCDC88B-201ENST00000301897 CNIH1O95406 144 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 BRI3O95415 125 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 NAPSAO96009 420 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 APOA2P02652 100 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 ZBTB25P24278 435 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 RPS16P62249 146 aaKnown RBP11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 ZNF880Q6PDB4 577 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 PDPNQ86YL7 162 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 ZFP41Q8N8Y5 198 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 OR2K2Q8NGT1 345 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 KCNG3Q8TAE7 436 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 FAAP24Q9BTP7 215 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 TMEM59Q9BXS4 323 aa11.27□□□□□ -0.61
CCDC88B-201ENST00000301897 TRBV6-6A0A0A6YYG2 114 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 SHISA3A0PJX4 238 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 ANKRD34BA5PLL1 514 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 SYNJ2BPP57105 145 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 RPS27AP62979 156 aaKnown RBP11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 TTC23Q5W5X9 447 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 C6orf201Q7Z4U5 140 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 LAX1Q8IWV1 398 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 PQLC1Q8N2U9 271 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 ABHD14BQ96IU4 210 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 USMG5Q96IX5 58 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 THAP7Q9BT49 309 aaPredicted RBP11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 S100A14Q9HCY8 104 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 SMPD3Q9NY59 655 aaPredicted RBP11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 PEF1Q9UBV8 284 aaKnown RBP11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 ZNF221Q9UK13 617 aa11.26□□□□□ -0.61
CCDC88B-201ENST00000301897 AIREO43918 545 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 OR2A4O95047 310 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 IGKV1-16P04430 117 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 CEACAM6P40199 344 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 LGALS7P47929 136 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 GLT8D1Q68CQ7 371 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 IL34Q6ZMJ4 242 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 OR5T1Q8NG75 326 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 SETD6Q8TBK2 473 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 PTX4Q96A99 478 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 TM2D1Q9BX74 207 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 C11orf54Q9H0W9 315 aaPredicted RBP11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 PLEKHJ1Q9NW61 149 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 PEMTQ9UBM1 199 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 CEPT1Q9Y6K0 416 aa11.25□□□□□ -0.61
CCDC88B-201ENST00000301897 A0A0B4J203 849 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 PNMA8CA0A1B0GUJ8 204 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 EFCAB10A6NFE3 127 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 SLC25A17O43808 307 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 CELP19835 753 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 CBX3Q13185 183 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 RPEL1Q2QD12 228 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 ZNF343Q6P1L6 599 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 SETD9Q8NE22 299 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 GGHQ92820 318 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 SNAPC3Q92966 411 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 TINAGL1Q9GZM7 467 aaPredicted RBP11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 HIPK2Q9H2X6 1198 aa11.24□□□□□ -0.61
CCDC88B-201ENST00000301897 EBAG9O00559 213 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 TPPPO94811 219 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 BPNT1O95861 308 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 CSN3P07498 182 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 HTR2CP28335 458 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 HLA-DRB3P79483 266 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 TAGLNQ01995 201 aaKnown RBP11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 ST3GAL4Q11206 333 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 C1orf100Q5SVJ3 147 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 DRAXINQ8NBI3 349 aaPredicted RBP11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 PHYHIPQ92561 330 aa11.23□□□□□ -0.61
CCDC88B-201ENST00000301897 PARP12Q9H0J9 701 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms