RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ICAM4Q14773 271 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 ZCCHC24Q8N2G6 241 aaKnown RBP13.96□□□□□ -0.17
VPS54-201ENST00000272322 RPUSD4Q96CM3 377 aaKnown RBP13.96□□□□□ -0.17
VPS54-201ENST00000272322 ZDHHC11Q9H8X9 412 aa13.96□□□□□ -0.17
VPS54-201ENST00000272322 OPN1MWP04001 364 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 ACAA1P09110 424 aaPredicted RBP13.96□□□□□ -0.18
VPS54-201ENST00000272322 OPN1MW2P0DN77 364 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 OPN1MW3P0DN78 364 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 EGR1P18146 543 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 TLE4Q04727 773 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 KIAA0141Q14154 515 aaPredicted RBP13.96□□□□□ -0.18
VPS54-201ENST00000272322 GNPNAT1Q96EK6 184 aaPredicted RBP13.96□□□□□ -0.18
VPS54-201ENST00000272322 C5orf30Q96GV9 206 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 TAAR6Q96RI8 345 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 PKIBQ9C010 78 aa13.96□□□□□ -0.18
VPS54-201ENST00000272322 MT-ND4LP03901 98 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 SRP19P09132 144 aaKnown RBP13.95□□□□□ -0.18
VPS54-201ENST00000272322 NDUFA6P56556 154 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 ZNF880Q6PDB4 577 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 COQ2Q96H96 371 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 NIPSNAP3BQ9BS92 247 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 TMEM204Q9BSN7 226 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 A0A1B0GU03 582 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 RBKSQ9H477 322 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 NIT2Q9NQR4 276 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 MAP1AP78559 2803 aaPredicted RBP13.95□□□□□ -0.18
VPS54-201ENST00000272322 NCOR2Q9Y618 2525 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 NDUFA2O43678 99 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 IFNA17P01571 189 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 BAXQ07812 192 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 SLC38A11Q08AI6 406 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 Q6ZT83 130 aa13.95□□□□□ -0.18
VPS54-201ENST00000272322 LINC00473A8K010 186 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 CYB5BO43169 146 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 CXCL1P09341 107 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 ZNF726P1Q15940 193 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 C15orf54Q8N8G6 183 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 LHX4Q969G2 390 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 LIN7CQ9NUP9 197 aaKnown RBP13.94□□□□□ -0.18
VPS54-201ENST00000272322 SPTBN4Q9H254 2564 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 TMEM30CPA0ZSE6 113 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 ODAMA1E959 279 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 FCGR3BO75015 233 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 MSMPQ1L6U9 139 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 WDR82Q6UXN9 313 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 MEOX2P50222 304 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 GCSAMLQ5JQS6 135 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 DUX4L9Q6RFH8 374 aaPredicted RBP13.94□□□□□ -0.18
VPS54-201ENST00000272322 C11orf53Q8IXP5 236 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 RCC1LQ96I51 464 aaKnown RBP13.94□□□□□ -0.18
VPS54-201ENST00000272322 RAB40CQ96S21 281 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 SSX3Q99909 188 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 OPA3Q9H6K4 179 aa13.94□□□□□ -0.18
VPS54-201ENST00000272322 CHD8Q9HCK8 2581 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 K7EM74 188 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 IGKV1D-33P01593 117 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 IGKV1-33P01594 117 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 ERVK11-1P61568 191 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 RPL39P5Q59GN2 51 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 ZNF525Q8N782 197 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 WDR31Q8NA23 367 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 OR8G5Q8NG78 346 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 CLDND2Q8NHS1 167 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 SLC39A9Q9NUM3 307 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 UBE2G2P60604 165 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 TFF3Q07654 80 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 Q6ZS49 121 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 KIAA1456Q9P272 454 aa13.93□□□□□ -0.18
VPS54-201ENST00000272322 TGIF2LYQ8IUE0 185 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.92□□□□□ -0.18
VPS54-201ENST00000272322 DFFBO76075 338 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 HOXA1P49639 335 aaPredicted RBP13.92□□□□□ -0.18
VPS54-201ENST00000272322 HMGN3Q15651 99 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 WDR25Q64LD2 544 aaPredicted RBP13.92□□□□□ -0.18
VPS54-201ENST00000272322 H2BFWTQ7Z2G1 175 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 MOGAT3Q86VF5 341 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 LFNGQ8NES3 379 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 Q8WTZ3 238 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 ZNRD1Q9P1U0 126 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 CLCF1Q9UBD9 225 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 CD200P41217 278 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 ADIRFQ15847 76 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 NCR3LG1Q68D85 454 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 ZNF561Q8N587 486 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 CABLES2Q9BTV7 478 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 COA4Q9NYJ1 87 aa13.92□□□□□ -0.18
VPS54-201ENST00000272322 MAP1LC3B2A6NCE7 125 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 S100A9P06702 114 aaKnown RBP13.91□□□□□ -0.18
VPS54-201ENST00000272322 HBG1P69891 147 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 HBG2P69892 147 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 ZNF146Q15072 292 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 ZNF718Q3SXZ3 478 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 MAP1LC3BQ9GZQ8 125 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 TNFRSF9Q07011 255 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 ACP7Q6ZNF0 438 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 CD177Q8N6Q3 437 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 SNRNP40Q96DI7 357 aaKnown RBP13.91□□□□□ -0.18
VPS54-201ENST00000272322 BRWD1-AS2P59051 145 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 GFI1BQ5VTD9 330 aa13.91□□□□□ -0.18
VPS54-201ENST00000272322 RPP25LQ8N5L8 163 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms