RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ODF3L1Q8IXM7 274 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF525Q8N782 197 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 OR1N2Q8NGR9 330 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 CRISPLD2Q9H0B8 497 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF576Q9H609 170 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 PPP1R3CQ9UQK1 317 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 A0A0G2JRQ6 117 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 E9PLN8 166 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 PAX9P55771 341 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 HAPLN4Q86UW8 402 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 CHRDL1Q9BU40 450 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 A0A1W2PNR3 127 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 OR5B21A6NL26 309 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 NDUFS8O00217 210 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 SMIM21Q3B7S5 101 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 SHISA6Q6ZSJ9 500 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 RAB40CQ96S21 281 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 NUP210LQ5VU65 1888 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 MUC21A0A0G2JKD1 596 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 MUC21A0A140T8X8 626 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 MS4A18H0YCH9 400 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 RBFOX2O43251 390 aaKnown RBP eCLIP12.52□□□□□ -0.43e-8■■■■■ 34.2
PTPRA-201ENST00000216877 SCTP09683 121 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 PSG2P11465 335 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 EDDM3BP56851 147 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 MYBPHQ13203 477 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 MS4A18Q3C1V0 323 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 MUC21Q5SSG8 566 aa12.52□□□□□ -0.4
PTPRA-201ENST00000216877 IGHV1-69-2A0A0G2JMI3 117 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 CTSSP25774 331 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 CD38P28907 300 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 TCTAP57738 103 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 ACSM6Q6P461 480 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 PIGCQ92535 297 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 SARAFQ96BY9 339 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 Q96M66 194 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 RCHY1Q96PM5 261 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 FNDC4Q9H6D8 234 aaPredicted RBP12.52□□□□□ -0.41
PTPRA-201ENST00000216877 TAAR3PQ9P1P4 343 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 TRAV38-1A0A0B4J264 116 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 A0A0U1RQV5 110 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 CTXND1A0A1B0GTU2 59 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 COX5AP20674 150 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 HLA-BQ31612 363 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 RAET1LQ5VY80 246 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 RNASEKQ6P5S7 137 aaKnown RBP12.52□□□□□ -0.41
PTPRA-201ENST00000216877 OR5P3Q8WZ94 311 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 GTSF1LQ9H1H1 148 aa12.52□□□□□ -0.41
PTPRA-201ENST00000216877 PSG4Q00888 419 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 STPG3Q8N7X2 389 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 OR10P1Q8NGE3 313 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 KLHDC7BQ96G42 594 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 IGKV1D-13A0A0B4J2D9 117 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 G3V3Y1 287 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 CORTO00230 105 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 IGKV1-13P0DP09 117 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 COMPP49747 757 aaPredicted RBP12.51□□□□□ -0.41
PTPRA-201ENST00000216877 ZP4Q12836 540 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 HIST3H3Q16695 136 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 SDK2Q58EX2 2172 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 LMX1AQ8TE12 382 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 APOBEC3DQ96AK3 386 aaPredicted RBP12.51□□□□□ -0.41
PTPRA-201ENST00000216877 TMEM186Q96B77 213 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 IGHG1P01857 330 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 LINC00310P59036 64 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 LPAL2Q16609 132 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 BAHD1Q8TBE0 780 aaPredicted RBP12.51□□□□□ -0.41
PTPRA-201ENST00000216877 KCNK17Q96T54 332 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 AGMATQ9BSE5 352 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 CRIM1Q9NZV1 1036 aa12.51□□□□□ -0.41
PTPRA-201ENST00000216877 TMEM150CB9EJG8 249 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 M0R2Z0 102 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 HS3ST1O14792 307 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 MT-CO2P00403 227 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 DRD3P35462 400 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 GNB1P62873 340 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 FXYD3Q14802 87 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 CLEC7AQ9BXN2 247 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 PLA2G2FQ9BZM2 168 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 MOB1AQ9H8S9 216 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 CLEC5AQ9NY25 188 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 GJE1A6NN92 205 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 NPPCP23582 126 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 RPS21P63220 83 aaKnown RBP12.5□□□□□ -0.41
PTPRA-201ENST00000216877 PSG9Q00887 426 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 LRRC75BQ2VPJ9 315 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 LHFPL4Q7Z7J7 247 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 OSR2Q8N2R0 312 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 KIAA1549Q9HCM3 1950 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 WNT2P09544 360 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 CISD3P0C7P0 127 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 SLC25A6P12236 298 aa12.5□□□□□ -0.41
PTPRA-201ENST00000216877 FOXS1O43638 330 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 S1PR2O95136 353 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 HOXC12P31275 282 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 CA7P43166 264 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 ZNF83P51522 516 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 ACSF3Q4G176 576 aaPredicted RBP12.49□□□□□ -0.41
PTPRA-201ENST00000216877 GCSAMLQ5JQS6 135 aa12.49□□□□□ -0.41
PTPRA-201ENST00000216877 GCM1Q9NP62 436 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms