RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 JPT1Q9UK76 154 aa12.61□□□□□ -0.39
CLN3-264ENST00000637985 I3L521 148 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 SLC25A17O43808 307 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 UCHL1P09936 223 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 HTR2CP28335 458 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 RPS27AP62979 156 aaKnown RBP12.6□□□□□ -0.39
CLN3-264ENST00000637985 RUNX1Q01196 453 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 TRAM1Q15629 374 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 HAGHQ16775 308 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 MORN2Q502X0 79 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 LY6G6FQ5SQ64 297 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 LIPKQ5VXJ0 399 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 Q8N9W7 124 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 TM2D1Q9BX74 207 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 TMEM59Q9BXS4 323 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 PLSCR3Q9NRY6 295 aa12.6□□□□□ -0.39
CLN3-264ENST00000637985 SLC22A1O15245 554 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 LANCL1O43813 399 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 RGS11O94810 467 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 BPNT1O95861 308 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 TPBGQ13641 420 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 KIAA0141Q14154 515 aaPredicted RBP12.59□□□□□ -0.39
CLN3-264ENST00000637985 OR6M1Q8NGM8 313 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 GALMQ96C23 342 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 UBE2E2Q96LR5 201 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 S1PR3Q99500 378 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 RASL11BQ9BPW5 248 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 SULT4A1Q9BR01 284 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 ANKRD60Q9BZ19 345 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 VCX3BQ9H321 246 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 GNB4Q9HAV0 340 aa12.59□□□□□ -0.39
CLN3-264ENST00000637985 TMEM14DPA8MWL7 114 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 ZNF736B4DX44 427 aaPredicted RBP12.58□□□□□ -0.4
CLN3-264ENST00000637985 RGS10O43665 173 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 RRP9O43818 475 aaKnown RBP12.58□□□□□ -0.4
CLN3-264ENST00000637985 YPEL1O60688 119 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 LY6G6CO95867 125 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 PSMA1P25786 263 aaKnown RBP12.58□□□□□ -0.4
CLN3-264ENST00000637985 QRFPP83859 136 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 UNC119Q13432 240 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 OR10K2Q6IF99 312 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 YPEL2Q96QA6 119 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 FAAP24Q9BTP7 215 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 ABHD14AQ9BUJ0 271 aa12.58□□□□□ -0.4
CLN3-264ENST00000637985 ARL6IP5O75915 188 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 HSMCR30P0CW71 290 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 CPEP16870 476 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 RANBP1P43487 201 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 GNB1P62873 340 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 MLLT11Q13015 90 aaPredicted RBP12.57□□□□□ -0.4
CLN3-264ENST00000637985 GNMTQ14749 295 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 HMGN3Q15651 99 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 ACSM6Q6P461 480 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 TMEM91Q6ZNR0 172 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 PRSS48Q7RTY5 328 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 C6orf201Q7Z4U5 140 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 SGPP2Q8IWX5 399 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 OR52L2PQ8NGH6 319 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 GATAD1Q8WUU5 269 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 DLX4Q92988 240 aaPredicted RBP12.57□□□□□ -0.4
CLN3-264ENST00000637985 TMEM203Q969S6 136 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 URM1Q9BTM9 101 aaKnown RBP12.57□□□□□ -0.4
CLN3-264ENST00000637985 ABRACLQ9P1F3 81 aa12.57□□□□□ -0.4
CLN3-264ENST00000637985 SLC17A2O00624 439 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 NAPSAO96009 420 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 ARSBP15848 533 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 VDAC1P21796 283 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 CRHBPP24387 322 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 CNTFRP26992 372 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 BLVRBP30043 206 aaPredicted RBP12.56□□□□□ -0.4
CLN3-264ENST00000637985 PPP1CCP36873 323 aaKnown RBP12.56□□□□□ -0.4
CLN3-264ENST00000637985 LSAMPQ13449 338 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 ZNF880Q6PDB4 577 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 ODF3L1Q8IXM7 274 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 ZNF491Q8N8L2 437 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 CYYR1Q96J86 154 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 NICN1Q9BSH3 213 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 CCDC90BQ9GZT6 254 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 KLK15Q9H2R5 256 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 GHITMQ9H3K2 345 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 RIMS4Q9H426 269 aaPredicted RBP12.56□□□□□ -0.4
CLN3-264ENST00000637985 PLEKHJ1Q9NW61 149 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 VSIG4Q9Y279 399 aa12.56□□□□□ -0.4
CLN3-264ENST00000637985 TRBV6-6A0A0A6YYG2 114 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 SOX6P35712 828 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 HSPA13P48723 471 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 F2RL1P55085 397 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 RPS25P62851 125 aaKnown RBP12.55□□□□□ -0.4
CLN3-264ENST00000637985 MOB1BQ7L9L4 216 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 SVOPQ8N4V2 548 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 FAM89BQ8N5H3 189 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 OR2AK2Q8NG84 335 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 KCTD7Q96MP8 289 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 OR5B12Q96R08 314 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 LPAR5Q9H1C0 372 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 KCNK15Q9H427 330 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 PLGRKTQ9HBL7 147 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 CHMP1AQ9HD42 196 aaPredicted RBP12.55□□□□□ -0.4
CLN3-264ENST00000637985 KIAA1456Q9P272 454 aa12.55□□□□□ -0.4
CLN3-264ENST00000637985 STEAP1Q9UHE8 339 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms