RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 IGHV4-59P01825 116 aa8□□□□□ -1.13
CLN3-261ENST00000637686 AMY2AP04746 511 aa8□□□□□ -1.13
CLN3-261ENST00000637686 RNASE1P07998 156 aaKnown RBP8□□□□□ -1.13
CLN3-261ENST00000637686 GSTT2P0CG29 244 aa8□□□□□ -1.13
CLN3-261ENST00000637686 OR5H8P0DN80 308 aa8□□□□□ -1.13
CLN3-261ENST00000637686 PAX6P26367 422 aa8□□□□□ -1.13
CLN3-261ENST00000637686 IER3P46695 156 aa8□□□□□ -1.13
CLN3-261ENST00000637686 UCP3P55916 312 aa8□□□□□ -1.13
CLN3-261ENST00000637686 LGALS4P56470 323 aa8□□□□□ -1.13
CLN3-261ENST00000637686 MSMO1Q15800 293 aa8□□□□□ -1.13
CLN3-261ENST00000637686 HEPN1Q6WQI6 88 aa8□□□□□ -1.13
CLN3-261ENST00000637686 NRARPQ7Z6K4 114 aa8□□□□□ -1.13
CLN3-261ENST00000637686 LHFPL4Q7Z7J7 247 aa8□□□□□ -1.13
CLN3-261ENST00000637686 LDLRAD3Q86YD5 345 aa8□□□□□ -1.13
CLN3-261ENST00000637686 OR11H6Q8NGC7 330 aa8□□□□□ -1.13
CLN3-261ENST00000637686 OR6F1Q8NGZ6 308 aa8□□□□□ -1.13
CLN3-261ENST00000637686 TERB2Q8NHR7 220 aa8□□□□□ -1.13
CLN3-261ENST00000637686 SSMEM1Q8WWF3 244 aa8□□□□□ -1.13
CLN3-261ENST00000637686 CREB3L1Q96BA8 519 aa8□□□□□ -1.13
CLN3-261ENST00000637686 CYYR1Q96J86 154 aa8□□□□□ -1.13
CLN3-261ENST00000637686 TINAGL1Q9GZM7 467 aaPredicted RBP8□□□□□ -1.13
CLN3-261ENST00000637686 TMEM133Q9H2Q1 129 aa8□□□□□ -1.13
CLN3-261ENST00000637686 EHFQ9NZC4 300 aa8□□□□□ -1.13
CLN3-261ENST00000637686 NUBP2Q9Y5Y2 271 aa8□□□□□ -1.13
CLN3-261ENST00000637686 A0A087X0M5 115 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 A0A1B0GX30 115 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 ODF3BA8MYP8 253 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 YPEL1O60688 119 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 RGS11O94810 467 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 HBZP02008 142 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 PMP2P02689 132 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 SCTP09683 121 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 ZBTB25P24278 435 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 MECP2P51608 486 aaKnown RBP7.99□□□□□ -1.13
CLN3-261ENST00000637686 TSPAN5P62079 268 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 HERPUD1Q15011 391 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 TRIM16LQ309B1 348 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 ZNF626Q68DY1 528 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 H1FOOQ8IZA3 346 aaPredicted RBP7.99□□□□□ -1.13
CLN3-261ENST00000637686 ABHD12Q8N2K0 398 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 TMEM86BQ8N661 226 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 C8orf31Q8N9H6 132 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 BEND2Q8NDZ0 799 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 OR4D10Q8NGI6 311 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 OR51S1Q8NGJ8 323 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 OR56B4Q8NH76 319 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 OR10J5Q8NHC4 309 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 SPATA3Q8NHX4 192 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 RFESDQ8TAC1 157 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 CCDC107Q8WV48 283 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 EDARADDQ8WWZ3 215 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 TAF15Q92804 592 aaKnown RBP eCLIP7.99□□□□□ -1.13
CLN3-261ENST00000637686 ARL11Q969Q4 196 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 YPEL2Q96QA6 119 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 MARVELD1Q9BSK0 173 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 CLEC7AQ9BXN2 247 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 CHIAQ9BZP6 476 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 GHITMQ9H3K2 345 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 MCUBQ9NWR8 336 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 CALYQ9NYX4 217 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 ZNRD1Q9P1U0 126 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 POMT1Q9Y6A1 747 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 COL6A5A8TX70 2615 aa7.99□□□□□ -1.13
CLN3-261ENST00000637686 IGKV1-6A0A0C4DH72 117 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 TMEM89A2RUT3 159 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 M0QYG6 137 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 SLC22A5O76082 557 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 TCRBP04435 133 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 NFYBP25208 207 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 SSTR5P35346 364 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 UBE2MP61081 183 aaKnown RBP7.98□□□□□ -1.13
CLN3-261ENST00000637686 LTC4SQ16873 150 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 LDLRAD2Q5SZI1 272 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 UTF1Q5T230 341 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 LPCAT3Q6P1A2 487 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 PLET1Q6UQ28 207 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 CCBE1Q6UXH8 406 aaPredicted RBP7.98□□□□□ -1.13
CLN3-261ENST00000637686 IDO2Q6ZQW0 420 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 DYNAPQ8N1N2 210 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 OR13C8Q8NGS7 320 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 MAFIPQ8WZ33 124 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 MOB3AQ96BX8 217 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 MALSU1Q96EH3 234 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 ZNF486Q96H40 463 aaPredicted RBP7.98□□□□□ -1.13
CLN3-261ENST00000637686 KIRREL1Q96J84 757 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 SSX3Q99909 188 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 GINS4Q9BRT9 223 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 ALX4Q9H161 411 aaPredicted RBP7.98□□□□□ -1.13
CLN3-261ENST00000637686 MEGF9Q9H1U4 602 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 IDI2-AS1Q9NZ38 188 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 OR2W1Q9Y3N9 320 aa7.98□□□□□ -1.13
CLN3-261ENST00000637686 TBL2Q9Y4P3 447 aaKnown RBP7.98□□□□□ -1.13
CLN3-261ENST00000637686 LINC00854A0A1B0GVQ3 168 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 BTBD17A6NE02 478 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 FAM181BA6NEQ2 426 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 HSPA12AO43301 675 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 PPYP01298 95 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 IGHV3-7P01780 117 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 HKR1P10072 659 aa7.97□□□□□ -1.13
CLN3-261ENST00000637686 CD34P28906 385 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms