RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 TSPAN32Q96QS1 320 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 ZNF184Q99676 751 aaPredicted RBP2.4□□□□□ -2.03
VIM-210ENST00000637053 TMEM147Q9BVK8 224 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 TMEM133Q9H2Q1 129 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 JPT2Q9H910 190 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 GNB4Q9HAV0 340 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 PLEKHA3Q9HB20 300 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 NOX3Q9HBY0 568 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 DAZ1Q9NQZ3 744 aaKnown RBP2.4□□□□□ -2.03
VIM-210ENST00000637053 PARP11Q9NR21 331 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 DAZ3Q9NR90 486 aaKnown RBP2.4□□□□□ -2.03
VIM-210ENST00000637053 FAM49BQ9NUQ9 324 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 TMEM100Q9NV29 134 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 COMMD3Q9UBI1 195 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 PCYOX1Q9UHG3 505 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 RIMS3Q9UJD0 308 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 KLF13Q9Y2Y9 288 aaPredicted RBP2.4□□□□□ -2.03
VIM-210ENST00000637053 OR2W1Q9Y3N9 320 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 ORC6Q9Y5N6 252 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 TROQ12816 1431 aaPredicted RBP2.4□□□□□ -2.03
VIM-210ENST00000637053 MYO5BQ9ULV0 1848 aa2.4□□□□□ -2.03
VIM-210ENST00000637053 CHD1O14646 1710 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 FANCAO15360 1455 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 POLA1P09884 1462 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 ZCCHC11Q5TAX3 1644 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 ZFYVE16Q7Z3T8 1539 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 LMTK2Q8IWU2 1503 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF608Q9ULD9 1512 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 KDM5AP29375 1690 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 IGKV1D-8A0A087WSZ0 117 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 LOC107984640A0A0U1RRK4 108 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 DHRS12A0PJE2 317 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PLAC8L1A1L4L8 177 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 C5orf49A4QMS7 147 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 KNCNA6PVL3 124 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF705EA8MWA4 302 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 CLDN25C9JDP6 229 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 H0YJW9 148 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 RPL36A-HNRNPH2H7BZ11 118 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 BCL2L11O43521 198 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 TYROBPO43914 113 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 MRPS14O60783 128 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 PDCD6O75340 191 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CDK2AP2O75956 126 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF432O94892 652 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 NTN1O95631 604 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 NGFP01138 241 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PTHP01270 115 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 IGKV2-30P06310 120 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CD2P06729 351 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 EIF4EP06730 217 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 CD55P08174 381 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 MMP7P09237 267 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 HLA-EP13747 358 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CTLA4P16410 223 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF19P17023 458 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CCL1P22362 96 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 GNLYP22749 145 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 DRD3P35462 400 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PPP1CCP36873 323 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 TGFBR1P36897 503 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF140P52738 457 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 SLC18A1P54219 525 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CTBP2P56545 445 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 DEFA3P59666 94 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 DAD1P61803 113 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 CACNG7P62955 275 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 HLA-DRB3P79483 266 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 DCDP81605 110 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 LOXL1Q08397 574 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 FHL1Q13642 323 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ARFRP1Q13795 201 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 MMDQ15546 238 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 NRF1Q16656 503 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF718Q3SXZ3 478 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 TCEAL5Q5H9L2 206 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PAGE3Q5JUK9 113 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 Q5XG85 94 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 C11orf87Q6NUJ2 197 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SCGB1D4Q6XE38 83 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF695Q8IW36 515 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SLC25A45Q8N413 288 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 FTMTQ8N4E7 242 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 SAMD12Q8N8I0 201 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 C5orf17Q8NAS9 161 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 PLPP5Q8NEB5 264 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 OR52R1Q8NGF1 315 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 RFESDQ8TAC1 157 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF519Q8TB69 540 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 APOBEC4Q8WW27 367 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 KLK6Q92876 244 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 FGF14Q92915 247 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ZNF501Q96CX3 271 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 SLC25A44Q96H78 314 aaPredicted RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 CARD19Q96LW7 228 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 OR4C12Q96R67 309 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 METTL26Q96S19 204 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 MEIS3Q99687 375 aa2.39□□□□□ -2.03
VIM-210ENST00000637053 ADAT1Q9BUB4 502 aaKnown RBP2.39□□□□□ -2.03
VIM-210ENST00000637053 MOB1AQ9H8S9 216 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms