RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 UEVLDQ8IX04 471 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 OR52N5Q8NH56 324 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 KLHDC7BQ96G42 594 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 SMIM10Q96HG1 83 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 C2orf72A6NCS6 295 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 H3BP45 60 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 LINC01565O15544 149 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 HSBP1O75506 76 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 GPM6AP51674 278 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 TCTEX1D4Q5JR98 221 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF324BQ6AW86 544 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 OR10G8Q8NGN5 311 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 PLPPR1Q8TBJ4 325 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ABHD14BQ96IU4 210 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 VSIRQ9H7M9 311 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 NECAP2Q9NVZ3 263 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 KCNIP1Q9NZI2 227 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 LAMA1P25391 3075 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 A0A1W2PP11 408 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 CHST1O43916 411 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 RPS4XP62701 263 aaKnown RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 HERV-K104P63124 156 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 RPL18Q07020 188 aaKnown RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ODF1Q14990 250 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ACSF3Q4G176 576 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 CXorf66Q5JRM2 361 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 LINC00114Q6XXX2 140 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 FAM19A2Q8N3H0 131 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 OR2K2Q8NGT1 345 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 FGF14Q92915 247 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 HINT2Q9BX68 163 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 CLEC7AQ9BXN2 247 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 RTN4RQ9BZR6 473 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 DNAJB12Q9NXW2 375 aaKnown RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 JKAMPQ9P055 326 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 C19orf53Q9UNZ5 99 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 EXPH5Q8NEV8 1989 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 FAM231BA6NCW3 169 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 GAGE12HA6NDE8 117 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 C11orf98E9PRG8 122 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 TLX3O43711 291 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ISG15P05161 165 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 WNT2P09544 360 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CST6Q15828 149 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF726P1Q15940 193 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SRSF7Q16629 238 aaKnown RBP eCLIP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 PRTGQ2VWP7 1150 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CD300EQ496F6 205 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 PARM1Q6UWI2 310 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 OR5A1Q8NGJ0 315 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 MSI2Q96DH6 328 aaKnown RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SIGLEC12Q96PQ1 595 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ST20Q9HBF5 79 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SS18L2Q9UHA2 77 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ADAMTS20P59510 1910 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 A0A1B0GW15 77 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 A0A1W2PS18 150 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SLC31A1O15431 190 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ADAM20O43506 726 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 PAGE4O60829 102 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 REG1AP05451 166 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 GDF1P27539 372 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 OR3A4PP47883 348 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 RHOBP62745 196 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 PRDX1Q06830 199 aaKnown RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 MGAT2Q10469 447 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 MRPL54Q6P161 138 aaKnown RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 WDR74Q6RFH5 385 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 UBALD2Q8IYN6 164 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 TM4SF19Q96DZ7 209 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ADAT3Q96EY9 351 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 EAF1Q96JC9 268 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SLC25A22Q9H936 323 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 NPVFQ9HCQ7 196 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ANXA10Q9UJ72 324 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 SLC17A4Q9Y2C5 497 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 TSSC4Q9Y5U2 329 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-213ENST00000636759 KIF26BQ2KJY2 2108 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 TRAV9-1A0A075B6T8 112 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 TRBV9A0A0B4J1U6 114 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 C11orf94C9JXX5 98 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 MPPED1O15442 326 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 LATO43561 262 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CNIH1O95406 144 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 BGLAPP02818 100 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 MT-ND6P03923 174 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 FTH1P19P0C7X4 201 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 C1QTNF9P0C862 333 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CA7P43166 264 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 HBG1P69891 147 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 HBG2P69892 147 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CEACAM21Q3KPI0 293 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 OR10J3Q5JRS4 329 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 CCDC144NLQ6NUI1 221 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 NEGR1Q7Z3B1 354 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 VN1R4Q7Z5H5 301 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 LYPD6Q86Y78 171 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 LMX1AQ8TE12 382 aa5.85□□□□□ -1.47
SCN1A-213ENST00000636759 ZC2HC1AQ96GY0 325 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms