RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR52L2PQ8NGH6 319 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 OR4K15Q8NH41 348 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 MRPS24Q96EL2 167 aaKnown RBP10.82□□□□□ -0.68
CLN3-249ENST00000636685 FAM192AQ9GZU8 254 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 OR2S2Q9NQN1 319 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 METTL1Q9UBP6 276 aaKnown RBP10.82□□□□□ -0.68
CLN3-249ENST00000636685 TRAPPC2LQ9UL33 140 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 RAB26Q9ULW5 256 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 SAA2-SAA4A0A096LPE2 208 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 DENRO43583 198 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 SULT1B1O43704 296 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 FADS2O95864 444 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 SAA2P0DJI9 122 aaPredicted RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 AADACP22760 399 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 PPP1CCP36873 323 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 KIR2DS2P43631 304 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 RBM11P57052 281 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 NANOS2P60321 138 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 PTGES3Q15185 160 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 GLDNQ6ZMI3 551 aaPredicted RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 Q6ZWC4 215 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 KCTD20Q7Z5Y7 419 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 TMEM163Q8TC26 289 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 RNF183Q96D59 192 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 GPER1Q99527 375 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 RCC2Q9P258 522 aaKnown RBP10.81□□□□□ -0.68
CLN3-249ENST00000636685 ING4Q9UNL4 249 aa10.81□□□□□ -0.68
CLN3-249ENST00000636685 BMPR1BO00238 502 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 GNGT2O14610 69 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 RBMXL2O75526 392 aaKnown RBP10.8□□□□□ -0.68
CLN3-249ENST00000636685 CDRT1O95170 752 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 GSTP1P09211 210 aaKnown RBP10.8□□□□□ -0.68
CLN3-249ENST00000636685 ANXA8P13928 327 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 RCC1P18754 421 aaPredicted RBP10.8□□□□□ -0.68
CLN3-249ENST00000636685 EFNB1P98172 346 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 ZNF85Q03923 595 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 FXYD3Q14802 87 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 PSG5Q15238 335 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 C6orf183Q5T699 404 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 GID4Q8IVV7 300 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 STX19Q8N4C7 294 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 OR52N1Q8NH53 320 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 SNAPC3Q92966 411 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 IL4I1Q96RQ9 567 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 MYCBPQ99417 103 aaPredicted RBP10.8□□□□□ -0.68
CLN3-249ENST00000636685 TINAGL1Q9GZM7 467 aaPredicted RBP10.8□□□□□ -0.68
CLN3-249ENST00000636685 RAB9BQ9NP90 201 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 C8orf4Q9NR00 106 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 FBXL17Q9UF56 701 aa10.8□□□□□ -0.68
CLN3-249ENST00000636685 A0A0B4J203 849 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 RTL8CO15255 209 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 RAP2AP10114 183 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 FCGR1AP12314 374 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 FOLR2P14207 255 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 ASCL4Q6XD76 172 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 GVQW1Q8N7I0 195 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 OR52B4Q8NGK2 314 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 OR5D14Q8NGL3 314 aa10.79□□□□□ -0.68
CLN3-249ENST00000636685 WARS2Q9UGM6 360 aaKnown RBP10.79□□□□□ -0.68
CLN3-249ENST00000636685 APOBP04114 4563 aaKnown RBP10.79□□□□□ -0.68
CLN3-249ENST00000636685 C2orf70A6NJV1 201 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 H7C2Y5 167 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 IFNA4P05014 189 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 CT45A6P0DMU7 189 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 CT45A5P0DMU8 189 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 CT45A7P0DMV0 189 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 HOXB6P17509 224 aaKnown RBP10.78□□□□□ -0.68
CLN3-249ENST00000636685 CTRB1P17538 263 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 NHLRC3Q5JS37 347 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 CTRB2Q6GPI1 263 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 FDX2Q6P4F2 183 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 TMEM61Q8N0U2 210 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 PACRGLQ8N7B6 248 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 OR51A2Q8NGJ7 313 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 C2CD4CQ8TF44 421 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 PRRG3Q9BZD7 231 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 TAF9BQ9HBM6 251 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 MBNL3Q9NUK0 354 aaKnown RBP10.78□□□□□ -0.68
CLN3-249ENST00000636685 TECRQ9NZ01 308 aaKnown RBP10.78□□□□□ -0.68
CLN3-249ENST00000636685 APLNQ9ULZ1 77 aa10.78□□□□□ -0.68
CLN3-249ENST00000636685 OR4C45A6NMZ5 311 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 H0YJW9 148 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 SLC22A1O15245 554 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 HTR1AP08908 422 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 APOC4P55056 127 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 AQP4P55087 323 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 SSBP2P81877 361 aaPredicted RBP10.77□□□□□ -0.69
CLN3-249ENST00000636685 RBMS2Q15434 407 aaKnown RBP10.77□□□□□ -0.69
CLN3-249ENST00000636685 TM4SF20Q53R12 229 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 RPL39P5Q59GN2 51 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 SERPINA12Q8IW75 414 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 CACNG8Q8WXS5 425 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 GHSRQ92847 366 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 USMG5Q96IX5 58 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 CYYR1Q96J86 154 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 IFI27L2Q9H2X8 130 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 COA4Q9NYJ1 87 aa10.77□□□□□ -0.69
CLN3-249ENST00000636685 A0A1W2PP11 408 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 OR5H14A6NHG9 310 aa10.76□□□□□ -0.69
CLN3-249ENST00000636685 RBBP9O75884 186 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms