RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KIAA1324LA8MWY0 1029 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A12PA8MX19 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A5PA8MXJ8 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A23PA8MXZ1 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 TMPRSS2O15393 492 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 TUSC2O75896 110 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A15PP0C7V4 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A13PP0C7W8 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A14PP0C7W9 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A24PP0C7X0 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 ACP1P24666 158 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 F2RP25116 425 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 CHRNA7P36544 502 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 MSMO1Q15800 293 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 LSM10Q969L4 123 aaKnown RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 GPR146Q96CH1 333 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 GMPPAQ96IJ6 420 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 RNF2Q99496 336 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 CHRNA10Q9GZZ6 450 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 ZDHHC11Q9H8X9 412 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 PATZ1Q9HBE1 687 aaKnown RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 UQCR10Q9UDW1 63 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 IGKV1-27A0A075B6S5 117 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 A0A1W2PN81 502 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 TNFSF12O43508 249 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 DUX1O43812 170 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 PDE6DO43924 150 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 NUPR1O60356 82 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 NRASP01111 189 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 KRASP01116 189 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 TFPI2P48307 235 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 C10orf128Q5T292 105 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 RNASE8Q8TDE3 154 aaKnown RBP9.22□□□□□ -0.93
UPF3A-212ENST00000619079 VN1R17PQ8TDU5 208 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF391Q9UJN7 358 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 LILRA5A6NI73 299 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 PGLYRP1O75594 196 aaPredicted RBP9.22□□□□□ -0.93
UPF3A-212ENST00000619079 OR7C1O76099 320 aaPredicted RBP9.22□□□□□ -0.93
UPF3A-212ENST00000619079 WNT2P09544 360 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 FKBP2P26885 142 aaKnown RBP9.22□□□□□ -0.93
UPF3A-212ENST00000619079 FUT6P51993 359 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 TDRG1Q3Y452 100 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 DHRS13Q6UX07 377 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 Q6ZPA2 131 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 FOXL2NBQ6ZUU3 175 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 LINC01551Q86U37 167 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 KCNE4Q8WWG9 221 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 OR4C12Q96R67 309 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF586Q9NXT0 402 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 ELOVL5Q9NYP7 299 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 PLEK2Q9NYT0 353 aa9.22□□□□□ -0.93
UPF3A-212ENST00000619079 IGHV1OR21-1A0A087WYE8 117 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 IGKV1-12A0A0C4DH73 117 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 C2orf72A6NCS6 295 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 AQP7P3A6NL99 342 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CD300LBA8K4G0 201 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 TM4SF5O14894 197 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 IGKV1D-12P01611 117 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 OR5G3P0C626 314 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 FTH1P19P0C7X4 201 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CRISP2P16562 243 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 ADMP35318 185 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CCL7P80098 99 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 ATP6V1FQ16864 119 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 PLPPR5Q32ZL2 321 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 AARDQ4LEZ3 155 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 TMEM42Q69YG0 159 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 DTX1Q86Y01 620 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CPEB3Q8NE35 698 aaKnown RBP9.21□□□□□ -0.93
UPF3A-212ENST00000619079 SAMD10Q9BYL1 202 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF552Q9H707 407 aaPredicted RBP9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CCL28Q9NRJ3 127 aa9.21□□□□□ -0.93
UPF3A-212ENST00000619079 CNOT1A5YKK6 2376 aaKnown RBP9.21□□□□□ -0.94
UPF3A-212ENST00000619079 MYO7BQ6PIF6 2116 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 UBE2L5PA0A1B0GUS4 154 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 EFNA2O43921 213 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 TOMM40O96008 361 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 SUMO1P63165 101 aaKnown RBP9.21□□□□□ -0.94
UPF3A-212ENST00000619079 SLC38A11Q08AI6 406 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 ARL16Q0P5N6 197 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 UBE2V1Q13404 147 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 RSPO1Q2MKA7 263 aaPredicted RBP9.21□□□□□ -0.94
UPF3A-212ENST00000619079 SNAI3Q3KNW1 292 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 SGMS2Q8NHU3 365 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 MRGPRDQ8TDS7 321 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 OR5P3Q8WZ94 311 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 STRADBQ9C0K7 418 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 SLC25A22Q9H936 323 aa9.21□□□□□ -0.94
UPF3A-212ENST00000619079 IGKV1D-13A0A0B4J2D9 117 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 A0A0G2JRQ6 117 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 A0A1B0GUS0 222 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 SHISA8B8ZZ34 492 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 C11orf94C9JXX5 98 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 CCL25O15444 150 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 CBR3O75828 277 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 SERPINA7P05543 415 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 IGKV1-13P0DP09 117 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 COX5AP20674 150 aa9.2□□□□□ -0.94
UPF3A-212ENST00000619079 FBLP22087 321 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms