RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LDLRAD3Q86YD5 345 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 OR51S1Q8NGJ8 323 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 OR8U1Q8NH10 309 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 PIPOXQ9P0Z9 390 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 ZNRD1Q9P1U0 126 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 GAB2Q9UQC2 676 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 TBL2Q9Y4P3 447 aaKnown RBP11.66□□□□□ -0.54
UPF1-211ENST00000600868 RBM7Q9Y580 266 aaKnown RBP11.66□□□□□ -0.54
UPF1-211ENST00000600868 MINOS1-NBL1R4GNA1 71 aa11.66□□□□□ -0.54
UPF1-211ENST00000600868 IGKV1D-13A0A0B4J2D9 117 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 LY6LH3BQJ8 138 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 BUB1B-PAK6H3BSN5 160 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 RAB29O14966 203 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 NPFFO15130 113 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 LYRM1O43325 122 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 SLC22A5O76082 557 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 IGKV1-13P0DP09 117 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 IL3RAP26951 378 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 HTR1DP28221 377 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 ECI1P42126 302 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 UCP3P55916 312 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 LGALS4P56470 323 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 FXYD4P59646 89 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 DCTN2Q13561 401 aaKnown RBP11.65□□□□□ -0.54
UPF1-211ENST00000600868 SCGB2B2Q4G0G5 96 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 IDO2Q6ZQW0 420 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 ODF3L1Q8IXM7 274 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 LYG1Q8N1E2 194 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.65□□□□□ -0.54
UPF1-211ENST00000600868 FXYD6Q9H0Q3 95 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 DPM3Q9P2X0 92 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 ZNF221Q9UK13 617 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 NUP50Q9UKX7 468 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 RNF150Q9ULK6 438 aa11.65□□□□□ -0.54
UPF1-211ENST00000600868 TLN2Q9Y4G6 2542 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 IGHV3OR16-10A0A075B7F0 116 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 A0A1W2PRD5 423 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 A0A1W2PRF3 423 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 A0A1W2PRM7 423 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 LEUTXA8MZ59 168 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 HNF1AP20823 631 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 BTCP35070 178 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 SAA4P35542 130 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 GPR12P47775 334 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 DEFA1P59665 94 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 DEFA3P59666 94 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 MSMO1Q15800 293 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 LDLRAD2Q5SZI1 272 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 FAM71F2Q6NXP2 309 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 MZT2BQ6NZ67 158 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 LPCAT3Q6P1A2 487 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 PIP4P2Q8N4L2 257 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 ZNF645Q8N7E2 425 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 OR13C8Q8NGS7 320 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 SECTM1Q8WVN6 248 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 ST6GALNAC6Q969X2 333 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 ABHD14BQ96IU4 210 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 SLC5A7Q9GZV3 580 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 OR2D2Q9H210 308 aa11.64□□□□□ -0.55
UPF1-211ENST00000600868 SAA2-SAA4A0A096LPE2 208 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 IGLV2-14P01704 120 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 SAA2P0DJI9 122 aaPredicted RBP11.63□□□□□ -0.55
UPF1-211ENST00000600868 CEACAM3P40198 252 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 SURF2Q15527 256 aaPredicted RBP11.63□□□□□ -0.55
UPF1-211ENST00000600868 RUSC1-AS1Q66K80 236 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 BRD3OSQ6XYD6 125 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 ZNF833PQ6ZTB9 187 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 C9orf139Q6ZV77 190 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 LHFPL4Q7Z7J7 247 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 SLC38A6Q8IZM9 456 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 ZBTB34Q8NCN2 500 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 TOMM40LQ969M1 308 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 MRGPRFQ96AM1 343 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 MALSU1Q96EH3 234 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 AJUBAQ96IF1 538 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 SCGB3A2Q96PL1 93 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 S1PR3Q99500 378 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 SLC25A21Q9BQT8 299 aaPredicted RBP11.63□□□□□ -0.55
UPF1-211ENST00000600868 ZNF251Q9BRH9 671 aa11.63□□□□□ -0.55
UPF1-211ENST00000600868 GSX1Q9H4S2 264 aaPredicted RBP11.63□□□□□ -0.55
UPF1-211ENST00000600868 OOSP1A8MZH6 123 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 EPHA1P21709 976 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 SLC6A1P30531 599 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 GNRHRP30968 328 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 CCR6P51684 374 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 ZNF816Q0VGE8 651 aaPredicted RBP11.62□□□□□ -0.55
UPF1-211ENST00000600868 RBMS2Q15434 407 aaKnown RBP11.62□□□□□ -0.55
UPF1-211ENST00000600868 PLA1AQ53H76 456 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 TPTE2P1Q5T6R2 138 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 POC5Q8NA72 575 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 ZFAND1Q8TCF1 268 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 ZNF486Q96H40 463 aaPredicted RBP11.62□□□□□ -0.55
UPF1-211ENST00000600868 AKR1E2Q96JD6 320 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 RSRP1Q9BUV0 290 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 CCL28Q9NRJ3 127 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 SDHAF2Q9NX18 166 aa11.62□□□□□ -0.55
UPF1-211ENST00000600868 MAST4O15021 2626 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 GPR31O00270 319 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 HSD17B6O14756 317 aa11.61□□□□□ -0.55
UPF1-211ENST00000600868 TXNL1O43396 289 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms