RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MSL2Q9HCI7 577 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 TMEM242Q9NWH2 141 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 ATP23Q9Y6H3 246 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 TRAV1-1A0A0B4J248 108 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 LILRA1O75019 489 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 NAPSAO96009 420 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 CST2P09228 141 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 TRIM61Q5EBN2 209 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 SPATA46Q5T0L3 261 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 PCSK4Q6UW60 755 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 ZNF808Q8N4W9 903 aaPredicted RBP15.57■□□□□ 0.08
UPF1-210ENST00000600689 CTDSP1Q9GZU7 261 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 FKBP11Q9NYL4 201 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 SIRPB1O00241 398 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 KBTBD11O94819 623 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 COX5BP10606 129 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 DSCR4P56555 118 aaPredicted RBP15.57■□□□□ 0.08
UPF1-210ENST00000600689 ZNF816Q0VGE8 651 aaPredicted RBP15.57■□□□□ 0.08
UPF1-210ENST00000600689 LRRC75BQ2VPJ9 315 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 DPPA3Q6W0C5 159 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 FOXL2NBQ6ZUU3 175 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 ACTR3CQ9C0K3 210 aaPredicted RBP15.57■□□□□ 0.08
UPF1-210ENST00000600689 PROK2Q9HC23 129 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 OR2W1Q9Y3N9 320 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 KLF7O75840 302 aaPredicted RBP15.56■□□□□ 0.08
UPF1-210ENST00000600689 CYP2G1PQ6ZSU1 146 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 MBD3L1Q8WWY6 194 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 TGOLN2O43493 480 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 COL8A2P25067 703 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 OR10G4Q8NGN3 311 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 DERL1Q9BUN8 251 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 ASPMQ8IZT6 3477 aa15.56■□□□□ 0.08
UPF1-210ENST00000600689 IGHV1-45A0A0A0MS14 117 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 LAMTOR5O43504 91 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 HRASP01112 189 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 HOXA4Q00056 320 aaPredicted RBP15.55■□□□□ 0.08
UPF1-210ENST00000600689 TFF3Q07654 80 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 Q6ZSR3 168 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 OR10G9Q8NGN4 311 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 OR10G7Q8NGN6 311 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 OR10D3Q8NH80 312 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 OR5P3Q8WZ94 311 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 RHBDL1O75783 438 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 RAC1P63000 192 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 TDRG1Q3Y452 100 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 FFAR4Q5NUL3 377 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 USF3Q68DE3 2245 aa15.55■□□□□ 0.08
UPF1-210ENST00000600689 MPLP40238 635 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 FGF12P61328 243 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 IL11RAQ14626 422 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 GCSAMLQ5JQS6 135 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 IL36GQ9NZH8 169 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 COX6A1P12074 109 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 SELEP16581 610 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 SSR4P51571 173 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 LINC00205P59089 165 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 IQCJQ1A5X6 159 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 TMEM170AQ8WVE7 144 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 TBX15Q96SF7 602 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 GPR35Q9HC97 309 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 TRAPPC1Q9Y5R8 145 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 DNAJC13O75165 2243 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 B4E171 279 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 GCGP01275 180 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 GCH1P30793 250 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 HOXA6P31267 233 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 G6PCP35575 357 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 TSPAN7P41732 249 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 RPS19BP1Q86WX3 136 aaKnown RBP15.54■□□□□ 0.08
UPF1-210ENST00000600689 MCEMP1Q8IX19 187 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 AGBL5Q8NDL9 886 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 TMEM68Q96MH6 324 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 MS4A10Q96PG2 267 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 IMMP2LQ96T52 175 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 P2RX4Q99571 388 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 PRRG4Q9BZD6 226 aa15.54■□□□□ 0.08
UPF1-210ENST00000600689 PATZ1Q9HBE1 687 aaKnown RBP15.54■□□□□ 0.08
UPF1-210ENST00000600689 GPR179Q6PRD1 2367 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 M0R143 59 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 C1QTNF9P0C862 333 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 CNN1P51911 297 aaKnown RBP15.53■□□□□ 0.08
UPF1-210ENST00000600689 CLDN15P56746 228 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 TGFBR3Q03167 851 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 ZNF324BQ6AW86 544 aaPredicted RBP15.53■□□□□ 0.08
UPF1-210ENST00000600689 TOMM20LQ6UXN7 152 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 RNASEH2CQ8TDP1 164 aaKnown RBP15.53■□□□□ 0.08
UPF1-210ENST00000600689 ZDHHC16Q969W1 377 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 ABHD14BQ96IU4 210 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 TRAPPC2LQ9UL33 140 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 POLR3KQ9Y2Y1 108 aaPredicted RBP15.53■□□□□ 0.08
UPF1-210ENST00000600689 NCOR1O75376 2440 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 C19orf67A6NJJ6 358 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 ARF1P84077 181 aaKnown RBP15.53■□□□□ 0.08
UPF1-210ENST00000600689 ABLIM2Q6H8Q1 611 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 DEFB123Q8N688 67 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 CPT1CQ8TCG5 803 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 IMMP1LQ96LU5 166 aa15.53■□□□□ 0.08
UPF1-210ENST00000600689 DOCK10Q96BY6 2186 aa15.52■□□□□ 0.08
UPF1-210ENST00000600689 NTN3O00634 580 aaPredicted RBP15.52■□□□□ 0.08
UPF1-210ENST00000600689 THBS3P49746 956 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms