RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EPOPA6NHQ4 379 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 GPX7Q96SL4 187 aaPredicted RBP17.67■□□□□ 0.42
UPF1-207ENST00000599848 LPAR5Q9H1C0 372 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 SCN4AP35499 1836 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 RBFOX3A6NFN3 312 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 H7C1H1 209 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 TGFAP01135 160 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 ZNF137PP52743 207 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 SRD5A3Q9H8P0 318 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 MARF1Q9Y4F3 1742 aaKnown RBP17.66■□□□□ 0.42
UPF1-207ENST00000599848 TRGC1P0CF51 173 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 SERF2P84101 59 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 HIST3H3Q16695 136 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 SCARF2Q96GP6 870 aaPredicted RBP17.66■□□□□ 0.42
UPF1-207ENST00000599848 SULT1A2P50226 295 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 SRSF9Q13242 221 aaKnown RBP eCLIP17.66■□□□□ 0.42
UPF1-207ENST00000599848 OR10AC1Q8NH08 325 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 RHOVQ96L33 236 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 TM4SF5O14894 197 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 VSIG8P0DPA2 414 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 DPM3Q9P2X0 92 aa17.66■□□□□ 0.42
UPF1-207ENST00000599848 NPIPB13A6NJU9 1138 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 NPIPB4C9JG80 1138 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 ALX3O95076 343 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 THY1P04216 161 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 MEF2CQ06413 473 aaPredicted RBP17.65■□□□□ 0.42
UPF1-207ENST00000599848 NSUN5P2Q63ZY6 315 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 VWA1Q6PCB0 445 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 SPNS2Q8IVW8 549 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 QTRT1Q9BXR0 403 aaKnown RBP17.65■□□□□ 0.42
UPF1-207ENST00000599848 IGLV3-19P01714 112 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 CELA2AP08217 269 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 SLC25A53Q5H9E4 307 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 TMEM106BQ9NUM4 274 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 M0R2Z0 102 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 PSG2P11465 335 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 PQLC2Q6ZP29 291 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 TMEM255AQ5JRV8 349 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 PNKDQ8N490 385 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 SHANK3Q9BYB0 1731 aa17.65■□□□□ 0.42
UPF1-207ENST00000599848 TMEM50BP56557 158 aa17.64■□□□□ 0.42
UPF1-207ENST00000599848 SLC35E4Q6ICL7 350 aa17.64■□□□□ 0.42
UPF1-207ENST00000599848 ZAR1Q86SH2 424 aa17.64■□□□□ 0.42
UPF1-207ENST00000599848 CADM3Q8N126 398 aa17.64■□□□□ 0.42
UPF1-207ENST00000599848 PRSS22Q9GZN4 317 aa17.64■□□□□ 0.42
UPF1-207ENST00000599848 CIDEAO60543 219 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 CIRBPQ14011 172 aaKnown RBP17.64■□□□□ 0.41
UPF1-207ENST00000599848 NRN1LQ496H8 165 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 GVQW1Q8N7I0 195 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 SCMH1Q96GD3 660 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 NIT2Q9NQR4 276 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 ADAP1O75689 374 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 TTRP02766 147 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 COX6CP09669 75 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 LHFPL5Q8TAF8 219 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 SPSB2Q99619 263 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 PARD6AQ9NPB6 346 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 SIRT7Q9NRC8 400 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 PHLDA3Q9Y5J5 127 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 TMEM52Q8NDY8 209 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 TMEM37Q8WXS4 190 aa17.64■□□□□ 0.41
UPF1-207ENST00000599848 FCGR3AP08637 254 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 MYOD1P15172 320 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 TOMM20LQ6UXN7 152 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 C7orf69Q9H7B7 122 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 SPAG17Q6Q759 2223 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 A0A1W2PPE3 182 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 PRSS12P56730 875 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 HSPE1P61604 102 aaKnown RBP17.63■□□□□ 0.41
UPF1-207ENST00000599848 HERPUD1Q15011 391 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 OR2D3Q8NGH3 330 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 NRIP2Q9BQI9 281 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 MRPS18CQ9Y3D5 142 aaKnown RBP17.63■□□□□ 0.41
UPF1-207ENST00000599848 ELOA3CA0A087WX78 387 aaPredicted RBP17.63■□□□□ 0.41
UPF1-207ENST00000599848 CYB5R3P00387 301 aaPredicted RBP17.63■□□□□ 0.41
UPF1-207ENST00000599848 HLA-DRB5Q30154 266 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 TMEM74BQ9NUR3 256 aa17.63■□□□□ 0.41
UPF1-207ENST00000599848 TRGV3P03979 118 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 FXYD3Q14802 87 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 CLLU1Q5K131 121 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 PRNTQ86SH4 94 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 OR1N2Q8NGR9 330 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 TRPM6Q9BX84 2022 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 CDRT15L2A8MXV6 281 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 E9PLN8 166 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 LINC00869P0C866 280 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 OR10J1P30954 320 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 VKORC1Q9BQB6 163 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 RAXQ9Y2V3 346 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 AKAP11Q9UKA4 1901 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 ZNF253O75346 499 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 HINT1P49773 126 aaPredicted RBP17.62■□□□□ 0.41
UPF1-207ENST00000599848 EWSR1Q01844 656 aaKnown RBP eCLIP17.62■□□□□ 0.41
UPF1-207ENST00000599848 BOLA1Q9Y3E2 137 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 C19orf67A6NJJ6 358 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 LRP11Q86VZ4 500 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 FAM90A1Q86YD7 464 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 SPINK4O60575 86 aa17.62■□□□□ 0.41
UPF1-207ENST00000599848 ZNF324O75467 553 aaPredicted RBP17.62■□□□□ 0.41
UPF1-207ENST00000599848 DTX4Q9Y2E6 619 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms