RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 VSIG10L2P0DP72 767 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 GNG10P50151 68 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 PAX2Q02962 417 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF818PQ6ZRF7 136 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 SLC25A48Q6ZT89 311 aaKnown RBP12.49□□□□□ -0.41
TRIM28-209ENST00000597423 LYG2Q86SG7 212 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 LINC01356Q8N9X3 169 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 OR10X1Q8NGY0 326 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 COQ8AQ8NI60 647 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 C1orf159Q96HA4 380 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 PHB2Q99623 299 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 HSD17B10Q99714 261 aaKnown RBP12.49□□□□□ -0.41
TRIM28-209ENST00000597423 AGMATQ9BSE5 352 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 MED28Q9H204 178 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 NAA60Q9H7X0 242 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 AMMECR1Q9Y4X0 333 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-209ENST00000597423 MALRD1Q5VYJ5 2156 aa12.49□□□□□ -0.41
TRIM28-209ENST00000597423 PTPN13Q12923 2485 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 C9orf170A2RU37 121 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 TOX4O94842 621 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 DUS4LO95620 317 aaKnown RBP12.48□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF134P52741 427 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 SRPXP78539 464 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 CATR1Q13166 79 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 DHRS2Q13268 280 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 PPP1R1AQ13522 171 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 CRYBG3Q68DQ2 2970 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF626Q68DY1 528 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF66Q6ZN08 573 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 TBC1D26Q86UD7 250 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 LYG1Q8N1E2 194 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 DRAM1Q8N682 238 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 TCTEX1D1Q8N7M0 179 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 ZNF439Q8NDP4 499 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 CAPSLQ8WWF8 208 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 LEAP2Q969E1 77 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 TMEM186Q96B77 213 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 ADTRPQ96IZ2 230 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 Q96MF0 132 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 PARP12Q9H0J9 701 aaKnown RBP12.48□□□□□ -0.41
TRIM28-209ENST00000597423 UNKLQ9H9P5 680 aaKnown RBP12.48□□□□□ -0.41
TRIM28-209ENST00000597423 INSIG2Q9Y5U4 225 aa12.48□□□□□ -0.41
TRIM28-209ENST00000597423 FASNP49327 2511 aaKnown RBP12.48□□□□□ -0.41
TRIM28-209ENST00000597423 KIAA2026Q5HYC2 2103 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 CELSR2Q9HCU4 2923 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 IGHV2-26A0A0B4J1V2 119 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 A0A0B4J2A0 478 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 C3orf85A0A1B0GTC6 90 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 A0A1B0GVG6 124 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 RNF223E7ERA6 249 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 IGHV3-7P01780 117 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 GZMKP49863 264 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 BCAP31P51572 246 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 FAM53AQ6NSI3 398 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-209ENST00000597423 LDLRAD3Q86YD5 345 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 C12orf45Q8N5I9 185 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-209ENST00000597423 Q8N7P7 452 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 BEND2Q8NDZ0 799 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 CD300LFQ8TDQ1 290 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 GALNT14Q96FL9 552 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 ABHD14BQ96IU4 210 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 SEC22CQ9BRL7 303 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 LPAR2Q9HBW0 351 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 MMP26Q9NRE1 261 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 SDHAF2Q9NX18 166 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 SHPKQ9UHJ6 478 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 CENPEQ02224 2701 aa12.47□□□□□ -0.41
TRIM28-209ENST00000597423 HMX3A6NHT5 357 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 F2RP25116 425 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 PAX8Q06710 450 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 DCAF12L2Q5VW00 463 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 LIN54Q6MZP7 749 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 FAM71F2Q6NXP2 309 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 UXS1Q8NBZ7 420 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 OR11H6Q8NGC7 330 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 CASTOR1Q8WTX7 329 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 MITD1Q8WV92 249 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 TMEM230Q96A57 120 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 IFI27L2Q9H2X8 130 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 LIN7CQ9NUP9 197 aaKnown RBP12.46□□□□□ -0.41
TRIM28-209ENST00000597423 PRELID3BQ9Y3B1 194 aa12.46□□□□□ -0.41
TRIM28-209ENST00000597423 TACC2O95359 2948 aa12.46□□□□□ -0.42
TRIM28-209ENST00000597423 NAV2Q8IVL1 2488 aa12.46□□□□□ -0.42
TRIM28-209ENST00000597423 A0A1W2PPE3 182 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 H0Y980 276 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 M0R1X1 148 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 SLC31A2O15432 143 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 TNFSF12O43508 249 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 IGLV2-14P01704 120 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 SERPINE2P07093 398 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 TRAPPC2P0DI81 140 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 TRAPPC2BP0DI82 140 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 ZNF16P17020 682 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-209ENST00000597423 EPHA1P21709 976 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 COX7A1P24310 79 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 CEACAM3P40198 252 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 KIR2DS2P43631 304 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 LGALS4P56470 323 aa12.45□□□□□ -0.42
TRIM28-209ENST00000597423 TAGLNQ01995 201 aaKnown RBP12.45□□□□□ -0.42
TRIM28-209ENST00000597423 SLC9A3R2Q15599 337 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms