RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NCR3LG1Q68D85 454 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 Q6ZNX1 250 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 ZNF818PQ6ZRF7 136 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 VMO1Q7Z5L0 202 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 ODF3L1Q8IXM7 274 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.16□□□□□ -0.3
SS18-211ENST00000578954 ZBTB34Q8NCN2 500 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 MAPK1IP1LQ8NDC0 245 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 OR13D1Q8NGV5 346 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 SECTM1Q8WVN6 248 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 C5orf30Q96GV9 206 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 CLEC7AQ9BXN2 247 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 OR2D2Q9H210 308 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 CCL28Q9NRJ3 127 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 AKAP9Q99996 3911 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 TRAV6A0A075B6T7 132 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 ODF3BA8MYP8 253 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 J3QLI3 93 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 GPR31O00270 319 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 TOX4O94842 621 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 IGHV3-7P01780 117 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 HOXB4P17483 251 aaPredicted RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 GNG10P50151 68 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 TAS2R31P59538 309 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 UBE2MP61081 183 aaKnown RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 DHODHQ02127 395 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 EIF4EBP1Q13541 118 aaPredicted RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 HLA-DRB5Q30154 266 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 ZNF626Q68DY1 528 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 FAHD2BQ6P2I3 314 aaPredicted RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 SLC25A42Q86VD7 318 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 DRAM1Q8N682 238 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 TMEM230Q96A57 120 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 FAHD2AQ96GK7 314 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 SLC2A9Q9NRM0 540 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 HIF1ANQ9NWT6 349 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 PIPOXQ9P0Z9 390 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 ZNF221Q9UK13 617 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 C14orf166Q9Y224 244 aaKnown RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 RBM7Q9Y580 266 aaKnown RBP13.15□□□□□ -0.3
SS18-211ENST00000578954 MYO9AB2RTY4 2548 aa13.15□□□□□ -0.3
SS18-211ENST00000578954 RNASEK-C17orf49H0YIS7 233 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 RAB29O14966 203 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 PROP1O75360 226 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 IL5P05113 134 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 DLX1P56177 255 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 FAM71F2Q6NXP2 309 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 CIARTQ8N365 385 aaPredicted RBP13.14□□□□□ -0.31
SS18-211ENST00000578954 PNKDQ8N490 385 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 ST6GALNAC6Q969X2 333 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 ABHD14BQ96IU4 210 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 ZNF251Q9BRH9 671 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 SDHAF2Q9NX18 166 aa13.14□□□□□ -0.31
SS18-211ENST00000578954 ABCA1O95477 2261 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 A0A1W2PPE3 182 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 HSD17B6O14756 317 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 PRAF2O60831 178 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 RLN1P04808 185 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 VSIG10L2P0DP72 767 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 PI3P19957 117 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 ANXA7P20073 488 aaKnown RBP13.13□□□□□ -0.31
SS18-211ENST00000578954 COX7A1P24310 79 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 GPR12P47775 334 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 PRRX1P54821 245 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 PIGPP57054 158 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 TMEM128Q5BJH2 165 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 CYB5R2Q6BCY4 276 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 TMED4Q7Z7H5 227 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 CMTM1Q8IZ96 169 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 CCDC71LQ8N9Z2 235 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 ADAD2Q8NCV1 583 aaKnown RBP13.13□□□□□ -0.31
SS18-211ENST00000578954 OR4P4Q8NGL7 312 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 PCGF1Q9BSM1 259 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 ZNRD1Q9P1U0 126 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 RNF150Q9ULK6 438 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 KCNS2Q9ULS6 477 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 AUP1Q9Y679 476 aa13.13□□□□□ -0.31
SS18-211ENST00000578954 MAP1AP78559 2803 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 SAA2-SAA4A0A096LPE2 208 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 A0A0B4J293 547 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 C7orf66A4D0T2 115 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 CRYM-AS1A6NIL9 109 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 TOR1AO14656 332 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 PGLYRP1O75594 196 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 DHFRP00374 187 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 TGFAP01135 160 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 SAA2P0DJI9 122 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 UBE2E1P51965 193 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 KLRD1Q13241 179 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 ABCA11PQ4W5N1 156 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 C1orf229Q6ZS94 237 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 ZNF833PQ6ZTB9 187 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 LYG1Q8N1E2 194 aa13.12□□□□□ -0.31
SS18-211ENST00000578954 RTN4IP1Q8WWV3 396 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 AMMECR1Q9Y4X0 333 aaPredicted RBP13.12□□□□□ -0.31
SS18-211ENST00000578954 LY6LH3BQJ8 138 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 BUB1B-PAK6H3BSN5 160 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 OR4E1P0C645 316 aa13.11□□□□□ -0.31
SS18-211ENST00000578954 ZNF16P17020 682 aaPredicted RBP13.11□□□□□ -0.31
SS18-211ENST00000578954 IL3RAP26951 378 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms