RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 P0C879 139 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 HOXB1P14653 301 aaPredicted RBP19.13■□□□□ 0.65
VPS53-211ENST00000571805 RPL30P62888 115 aaKnown RBP19.13■□□□□ 0.65
VPS53-211ENST00000571805 FAM90A2PQ658T7 463 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 ZNF787Q6DD87 383 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 SLC35E4Q6ICL7 350 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 FIP1L1Q6UN15 594 aaKnown RBP19.13■□□□□ 0.65
VPS53-211ENST00000571805 LCN15Q6UWW0 184 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 CXorf67Q86X51 503 aaPredicted RBP19.13■□□□□ 0.65
VPS53-211ENST00000571805 LILRB2Q8N423 598 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 ZBTB34Q8NCN2 500 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 RCC1LQ96I51 464 aaKnown RBP19.13■□□□□ 0.65
VPS53-211ENST00000571805 TRIB1Q96RU8 372 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 BCL2P10415 239 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 ZNF343Q6P1L6 599 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 TMEM14EPQ6UXP3 125 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 SLC16A13Q7RTY0 426 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 OR52L2PQ8NGH6 319 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 Q8WTZ3 238 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 TOLLIPQ9H0E2 274 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 RBKSQ9H477 322 aa19.13■□□□□ 0.65
VPS53-211ENST00000571805 AGFG2O95081 481 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 TNFRSF9Q07011 255 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 AESQ08117 197 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 WDR31Q8NA23 367 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 NANPQ8TBE9 248 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 OR2D2Q9H210 308 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 HSPB7Q9UBY9 170 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 CXorf65A6NEN9 183 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 IGKV3-15P01624 115 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 RPS10P46783 165 aaKnown RBP19.12■□□□□ 0.65
VPS53-211ENST00000571805 GLIPR1P48060 266 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 Q6ZR03 302 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 COQ2Q96H96 371 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 SIRT7Q9NRC8 400 aa19.12■□□□□ 0.65
VPS53-211ENST00000571805 DIDO1Q9BTC0 2240 aaKnown RBP19.12■□□□□ 0.65
VPS53-211ENST00000571805 OOEPA6NGQ2 149 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 ZFP92A6NM28 416 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 HBZP02008 142 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 CXCL1P09341 107 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 FGF8P55075 233 aaPredicted RBP19.11■□□□□ 0.65
VPS53-211ENST00000571805 BRWD1-AS2P59051 145 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 ERVFRD-1P60508 538 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 IL2RGP31785 369 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 RAB11AP62491 216 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 SLC38A11Q08AI6 406 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 TMEM41BQ5BJD5 291 aa19.11■□□□□ 0.65
VPS53-211ENST00000571805 TAF15Q92804 592 aaKnown RBP eCLIP19.11■□□□□ 0.65
VPS53-211ENST00000571805 G6PCP35575 357 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 B2MP61769 119 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 ACP7Q6ZNF0 438 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 CA5BP1Q8WTZ4 195 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 CXXC4Q9H2H0 198 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 CHD3Q12873 2000 aaKnown RBP19.1■□□□□ 0.65
VPS53-211ENST00000571805 USF3Q68DE3 2245 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 KRASP01116 189 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 TFF1P04155 84 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 S100A9P06702 114 aaKnown RBP19.1■□□□□ 0.65
VPS53-211ENST00000571805 ZNF806P0C7X5 589 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 KIR2DL2P43627 348 aaPredicted RBP19.1■□□□□ 0.65
VPS53-211ENST00000571805 OR2B11Q5JQS5 317 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 PRR7Q8TB68 274 aa19.1■□□□□ 0.65
VPS53-211ENST00000571805 PINX1Q96BK5 328 aaKnown RBP19.1■□□□□ 0.65
VPS53-211ENST00000571805 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP19.09■□□□□ 0.65
VPS53-211ENST00000571805 COX5AP20674 150 aa19.09■□□□□ 0.65
VPS53-211ENST00000571805 ZNF808Q8N4W9 903 aaPredicted RBP19.09■□□□□ 0.65
VPS53-211ENST00000571805 CNEP1R1Q8N9A8 125 aa19.09■□□□□ 0.65
VPS53-211ENST00000571805 B4DEV8 164 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 NKX2-8O15522 239 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 CLDN1O95832 211 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 ZNF816Q0VGE8 651 aaPredicted RBP19.08■□□□□ 0.65
VPS53-211ENST00000571805 PRAMEF6Q5VXH4 476 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 VWA1Q6PCB0 445 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 WDR82Q6UXN9 313 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 TCEAL7Q9BRU2 100 aa19.08■□□□□ 0.65
VPS53-211ENST00000571805 UBE2L5PA0A1B0GUS4 154 aa19.08■□□□□ 0.64
VPS53-211ENST00000571805 OR8G2PQ6IF36 304 aa19.08■□□□□ 0.64
VPS53-211ENST00000571805 CENPVQ7Z7K6 275 aaPredicted RBP19.08■□□□□ 0.64
VPS53-211ENST00000571805 URGCP-MRPS24S4R325 110 aa19.08■□□□□ 0.64
VPS53-211ENST00000571805 CACNA1DQ01668 2161 aa19.08■□□□□ 0.64
VPS53-211ENST00000571805 ODAMA1E959 279 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 LRRC30A6NM36 301 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 C17orf98A8MV24 154 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 CLN5O75503 358 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 S1PR2O95136 353 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 EIF2S3P41091 472 aaKnown RBP19.07■□□□□ 0.64
VPS53-211ENST00000571805 MSMO1Q15800 293 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 PRR14LQ5THK1 2151 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 C9orf106Q8NAJ2 232 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 FDCSPQ8NFU4 85 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 MRGPRDQ8TDS7 321 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 TCTEX1D2Q8WW35 142 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 P2RX4Q99571 388 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 METRNQ9UJH8 293 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 TGIF2-C20orf24A0A0A6YYL0 155 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 PTBP3O95758 552 aaKnown RBP19.07■□□□□ 0.64
VPS53-211ENST00000571805 CCL11P51671 97 aa19.07■□□□□ 0.64
VPS53-211ENST00000571805 ELLP55199 621 aaPredicted RBP19.07■□□□□ 0.64
VPS53-211ENST00000571805 KIAA0141Q14154 515 aaPredicted RBP19.07■□□□□ 0.64
VPS53-211ENST00000571805 TRIP6Q15654 476 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms