RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 HSD17B6O14756 317 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 RAB29O14966 203 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 BET1O15155 118 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 HOXA3O43365 443 aaPredicted RBP16.6■□□□□ 0.25
VPS53-210ENST00000571456 LANCL1O43813 399 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 RNASE1P07998 156 aaKnown RBP16.6■□□□□ 0.25
VPS53-210ENST00000571456 RCVRNP35243 200 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 ZNF134P52741 427 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 GNMTQ14749 295 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 FOXB2Q5VYV0 432 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 SNX29P2Q8IUI4 249 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 ZDHHC22Q8N966 263 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.6■□□□□ 0.25
VPS53-210ENST00000571456 OR5AP2Q8NGF4 316 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 MAFIPQ8WZ33 124 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 ST6GALNAC6Q969X2 333 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 S1PR3Q99500 378 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 RAB18Q9NP72 206 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 RDH8Q9NYR8 311 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 ZNF107Q9UII5 783 aaPredicted RBP16.6■□□□□ 0.25
VPS53-210ENST00000571456 GAB2Q9UQC2 676 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 HILPDAQ9Y5L2 63 aa16.6■□□□□ 0.25
VPS53-210ENST00000571456 SOX21Q9Y651 276 aaPredicted RBP16.6■□□□□ 0.25
VPS53-210ENST00000571456 MDFIC2A0A1B0GVS7 189 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 GABARAPH6UMI1 98 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 SLC22A5O76082 557 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 IGHV3-7P01780 117 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 TNFSF8P32971 234 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 IL18Q14116 193 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 SLC9A3R2Q15599 337 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 ACTBL2Q562R1 376 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 IGSF11Q5DX21 431 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 LDLRAD2Q5SZI1 272 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 LINC00299Q6ZSB3 139 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 H1FOOQ8IZA3 346 aaPredicted RBP16.59■□□□□ 0.25
VPS53-210ENST00000571456 LYG1Q8N1E2 194 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 DTX3Q8N9I9 347 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 C17orf50Q8WW18 174 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 FCAMRQ8WWV6 532 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 OR1A1Q9P1Q5 309 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 VPREB3Q9UKI3 123 aa16.59■□□□□ 0.25
VPS53-210ENST00000571456 IGKV1D-8A0A087WSZ0 117 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 FABP12A6NFH5 140 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 RBBP9O75884 186 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 TBPP20226 339 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 UBA52P62987 128 aaKnown RBP16.58■□□□□ 0.24
VPS53-210ENST00000571456 HABP2Q14520 560 aaPredicted RBP16.58■□□□□ 0.24
VPS53-210ENST00000571456 UTF1Q5T230 341 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 THNSL2Q86YJ6 484 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 TGIF2LXQ8IUE1 241 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 GVQW1Q8N7I0 195 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 AGMATQ9BSE5 352 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 C11orf54Q9H0W9 315 aaPredicted RBP16.58■□□□□ 0.24
VPS53-210ENST00000571456 IFI27L2Q9H2X8 130 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 ZNF221Q9UK13 617 aa16.58■□□□□ 0.24
VPS53-210ENST00000571456 KMT2CQ8NEZ4 4911 aaKnown RBP16.57■□□□□ 0.24
VPS53-210ENST00000571456 A0A1W2PPE3 182 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 SLC31A2O15432 143 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 PTHLHP12272 177 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 OR3A3P47888 321 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 CDK10Q15131 360 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 PLA1AQ53H76 456 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 SPANXN2Q5MJ10 180 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 C16orf87Q6PH81 154 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 RTN4IP1Q8WWV3 396 aaPredicted RBP16.57■□□□□ 0.24
VPS53-210ENST00000571456 SNAPC3Q92966 411 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 ABHD1Q96SE0 405 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 ESM1Q9NQ30 184 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 TAS2R8Q9NYW2 309 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 MTFP1Q9UDX5 166 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 OR2W1Q9Y3N9 320 aa16.57■□□□□ 0.24
VPS53-210ENST00000571456 H3BUX3 64 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 IGHV4-59P01825 116 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 FAM106CPP0CH98 169 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 ETV6P41212 452 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 ZNF833PQ6ZTB9 187 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 C16orf82Q7Z2V1 217 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 C5orf24Q7Z6I8 188 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 DYNAPQ8N1N2 210 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 SMIM4Q8WVI0 70 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 SOSTQ9BQB4 213 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 TCF19Q9Y242 345 aa16.56■□□□□ 0.24
VPS53-210ENST00000571456 IGHV1-3A0A0C4DH29 117 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 A0A1W2PPI3 338 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 OR5H8P0DN80 308 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 FOXL1Q12952 345 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 OVCH2Q7RTZ1 564 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 OR6Q1Q8NGQ2 317 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 OR5H2Q8NGV7 314 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 BORCS5Q969J3 196 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 AKR1E2Q96JD6 320 aa16.55■□□□□ 0.24
VPS53-210ENST00000571456 RBM7Q9Y580 266 aaKnown RBP16.55■□□□□ 0.24
VPS53-210ENST00000571456 SAA2-SAA4A0A096LPE2 208 aa16.54■□□□□ 0.24
VPS53-210ENST00000571456 FAM90A9PA6NNJ1 464 aa16.54■□□□□ 0.24
VPS53-210ENST00000571456 ST8SIA5O15466 376 aa16.54■□□□□ 0.24
VPS53-210ENST00000571456 GSTZ1O43708 216 aaPredicted RBP16.54■□□□□ 0.24
VPS53-210ENST00000571456 TUSC2O75896 110 aa16.54■□□□□ 0.24
VPS53-210ENST00000571456 SAA2P0DJI9 122 aaPredicted RBP16.54■□□□□ 0.24
VPS53-210ENST00000571456 CD1BP29016 333 aa16.54■□□□□ 0.24
VPS53-210ENST00000571456 GPR12P47775 334 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms