RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CD47Q08722 323 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 GINS1Q14691 196 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RGNQ15493 299 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ECSCRQ19T08 205 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 IZUMO4Q1ZYL8 232 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 MICAQ29983 383 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ACOT6Q3I5F7 207 aaPredicted RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 KIAA1644Q3SXP7 199 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 PAGE3Q5JUK9 113 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 HIST2H3PS2Q5TEC6 136 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TMEM236Q5W0B7 351 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ELP2Q6IA86 826 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 SLC18B1Q6NT16 456 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 LINC00173Q6ZV60 143 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ZNF771Q7L3S4 317 aaPredicted RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 TCF24Q7RTU0 167 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ZNF550Q7Z398 422 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TRPT1Q86TN4 253 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 C10orf107Q8IVU9 208 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 SLC35F6Q8N357 371 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 FAM71E2Q8N5Q1 922 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 C3orf56Q8N813 242 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 NKAPP1Q8N9T2 125 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 OR2M7Q8NG81 312 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 NEIL3Q8TAT5 605 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 NT5CQ8TCD5 201 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ABHD3Q8WU67 409 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 BLNKQ8WV28 456 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 CCL17Q92583 94 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RDH5Q92781 318 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 UCN3Q969E3 161 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 FMC1Q96HJ9 113 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 SULT4A1Q9BR01 284 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 GINS3Q9BRX5 216 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 C2orf88Q9BSF0 95 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TMED9Q9BVK6 235 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 CLEC7AQ9BXN2 247 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 MS4A8Q9BY19 250 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TUBB1Q9H4B7 451 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RPF2Q9H7B2 306 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 ISG20L2Q9H9L3 353 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 PARVBQ9HBI1 364 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 TMEM100Q9NV29 134 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ZNF226Q9NYT6 803 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RBM12B-AS1Q9P1G2 102 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 OR1A1Q9P1Q5 309 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 RARRES3Q9UL19 164 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ANGPT4Q9Y264 503 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 ASB4Q9Y574 426 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 F11RQ9Y624 299 aaKnown RBP2.26□□□□□ -2.05
VPS35-209ENST00000568642 TRIP11Q15643 1979 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 CSMD3Q7Z407 3707 aa2.26□□□□□ -2.05
VPS35-209ENST00000568642 HRNRQ86YZ3 2850 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 IGHV1OR15-1A0A075B7D0 117 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 A0A087WX48 190 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 A0A0J9YXV3 536 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 FOXI3A8MTJ6 420 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 PRAC2D3DTV9 90 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 PPP5D1E7EU14 171 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 BET1O15155 118 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 PIN1P1O15428 100 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CRYZL1O95825 349 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CA2P00918 260 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 IFNA1P01562 189 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 ATP5G1P05496 136 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RCC1P18754 421 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 SLC2A5P22732 501 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 GATA2P23769 480 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 F2RP25116 425 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 ERP29P30040 261 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 POLR2IP36954 125 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 OR1E2P47887 323 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CCR6P51684 374 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RAB25P57735 213 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CDC42P60953 191 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 PRDX1Q06830 199 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 SRSF4Q08170 494 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 TWF1Q12792 350 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 EIF3IQ13347 325 aaKnown RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 SIX1Q15475 284 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 SURF2Q15527 256 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 ACSBG2Q5FVE4 666 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 MUC21Q5SSG8 566 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 FAM162BQ5T6X4 162 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 FBXW9Q5XUX1 488 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 LAMTOR1Q6IAA8 161 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 FAM53AQ6NSI3 398 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 CNIH2Q6PI25 160 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 SLC16A13Q7RTY0 426 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CDC20BQ86Y33 519 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 APLFQ8IW19 511 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 OSR2Q8N2R0 312 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 MTURNQ8N3F0 131 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 OR4M1Q8NGD0 313 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 OR52L1Q8NGH7 329 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 OR1S1Q8NH92 325 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 CD200R1Q8TD46 325 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 RGP1Q92546 391 aaPredicted RBP2.25□□□□□ -2.05
VPS35-209ENST00000568642 TMEM230Q96A57 120 aa2.25□□□□□ -2.05
VPS35-209ENST00000568642 APOBEC3DQ96AK3 386 aaPredicted RBP2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms