RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 FBXO7Q9Y3I1 522 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 ARHGAP21Q5T5U3 1957 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 IGLV3-9A0A075B6K5 115 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 A0A087WWC5 75 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 TRAV39A0A0B4J263 110 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 ODAMA1E959 279 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 LRRC30A6NM36 301 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 C1orf196B1AJZ1 125 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 C15orf65H3BRN8 121 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 M0R036 132 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 F2RL2O00254 374 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 YPEL1O60688 119 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CLDN1O95832 211 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 IFNA1P01562 189 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 MBP02144 154 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CRYAAP02489 173 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CRYBA1P05813 215 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 SNRNP70P08621 437 aaKnown RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 IAPPP10997 89 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 SPINK2P20155 84 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 GZMHP20718 246 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 PTAFRP25105 342 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CEACAM8P31997 349 aaPredicted RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 PRDX2P32119 198 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 GATA4P43694 442 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CEBPDP49716 269 aaPredicted RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 FABP6P51161 128 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 KLF3P57682 345 aaPredicted RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 NKX6-1P78426 367 aaPredicted RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 RUNX1Q01196 453 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 AESQ08117 197 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 SLC38A11Q08AI6 406 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 ICAM4Q14773 271 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 KRTCAP3Q53RY4 240 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 TMEM41BQ5BJD5 291 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 SLC35E3Q7Z769 313 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 HAPLN4Q86UW8 402 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 THNSL2Q86YJ6 484 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CD177Q8N6Q3 437 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.23□□□□□ -1.57
CLN3-223ENST00000566472 OR52L2PQ8NGH6 319 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 OR13A1Q8NGR1 328 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CLDND2Q8NHS1 167 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 MRGPRDQ8TDS7 321 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 TCTEX1D2Q8WW35 142 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 HIST1H2BAQ96A08 127 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 C14orf79Q96F83 325 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 C5orf30Q96GV9 206 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 MEGF10Q96KG7 1140 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 YPEL2Q96QA6 119 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 P2RX4Q99571 388 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 RBKSQ9H477 322 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 OR6C3Q9NZP0 311 aa5.23□□□□□ -1.57
CLN3-223ENST00000566472 CXorf65A6NEN9 183 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 B4DEV8 164 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 C3orf80F5H4A9 247 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 H3BP45 60 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 GPR37O15354 613 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 S1PR2O95136 353 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 NXPH3O95157 252 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 HPRT1P00492 218 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 METTL15P1P0C7V9 234 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 BCL2P10415 239 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 GLIPR1P48060 266 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 RAB7AP51149 207 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 SELENOVP59797 346 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 RPL30P62888 115 aaKnown RBP5.22□□□□□ -1.57
CLN3-223ENST00000566472 RPP30P78346 268 aaKnown RBP5.22□□□□□ -1.57
CLN3-223ENST00000566472 ARL16Q0P5N6 197 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 PNRC1Q12796 327 aaPredicted RBP5.22□□□□□ -1.57
CLN3-223ENST00000566472 VWC2Q2TAL6 325 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 SPANXN5Q5MJ07 72 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 ZNF787Q6DD87 383 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 ZNF474Q6S9Z5 364 aaPredicted RBP5.22□□□□□ -1.57
CLN3-223ENST00000566472 H2BFWTQ7Z2G1 175 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 ZNF561Q8N587 486 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 OR2Z1Q8NG97 314 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 OR52E5Q8NH55 327 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 FAM57AQ8TBR7 257 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 FAM222BQ8WU58 562 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 SFT2D1Q8WV19 159 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 TAF15Q92804 592 aaKnown RBP eCLIP5.22□□□□□ -1.57
CLN3-223ENST00000566472 S100PBPQ96BU1 408 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 MUCL1Q96DR8 90 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 TVP23CQ96ET8 276 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 OR4C12Q96R67 309 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 CLCC1Q96S66 551 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 ABHD14AQ9BUJ0 271 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 FAM234AQ9H0X4 552 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 MSL2Q9HCI7 577 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 SIRT7Q9NRC8 400 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 UFSP2Q9NUQ7 469 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 METRNQ9UJH8 293 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 FAM215AQ9Y5M1 114 aa5.22□□□□□ -1.57
CLN3-223ENST00000566472 ZDBF2Q9HCK1 2354 aa5.21□□□□□ -1.57
CLN3-223ENST00000566472 IGKV1D-17A0A075B6S4 117 aa5.21□□□□□ -1.58
CLN3-223ENST00000566472 PMS2P5A8MQ11 134 aa5.21□□□□□ -1.58
CLN3-223ENST00000566472 C17orf98A8MV24 154 aa5.21□□□□□ -1.58
CLN3-223ENST00000566472 C17orf112F2Z3M2 114 aa5.21□□□□□ -1.58
CLN3-223ENST00000566472 H3BQ15 152 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms