RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CDKN1BP46527 198 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 RNPS1Q15287 305 aaKnown RBP11.26□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF674Q2M3X9 581 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 C5orf24Q7Z6I8 188 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 MKXQ8IYA7 352 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 NEK7Q8TDX7 302 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 DOK5Q9P104 306 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 TAAR3PQ9P1P4 343 aa11.26□□□□□ -0.61
VPS4A-204ENST00000566354 IGKV1-6A0A0C4DH72 117 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 A0A1B0GU03 582 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 IFNA5P01569 189 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 CXCL1P09341 107 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 F2RP25116 425 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 GPM6AP51674 278 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 NDUFA6P56556 154 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 ERVFRD-1P60508 538 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 ZDHHC23Q8IYP9 409 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 OR10A7Q8NGE5 316 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 C22orf15Q8WYQ4 148 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 TMEM45BQ96B21 275 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 GAR1Q9NY12 217 aaKnown RBP11.25□□□□□ -0.61
VPS4A-204ENST00000566354 TRAPPC2LH3BP13 241 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 K7ENP7 123 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 METTL15P1P0C7V9 234 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 HLA-DRB3P79483 266 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF343Q6P1L6 599 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 INO80CQ6PI98 192 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-204ENST00000566354 H1FOOQ8IZA3 346 aaPredicted RBP11.25□□□□□ -0.61
VPS4A-204ENST00000566354 OR13D1Q8NGV5 346 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 ABHD3Q8WU67 409 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 HS3ST6Q96QI5 342 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 RAB40CQ96S21 281 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 DEFB127Q9H1M4 99 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 MTCH1Q9NZJ7 389 aa11.25□□□□□ -0.61
VPS4A-204ENST00000566354 BSNQ9UPA5 3926 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 TRAV17A0A0B4J275 112 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 LOC102723971A0A1B0GUV8 181 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 IFITM10A6NMD0 228 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 CYB5R2Q6BCY4 276 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 PCSK4Q6UW60 755 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 SMIM15Q7Z3B0 74 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 P4HA3Q7Z4N8 544 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 THNSL2Q86YJ6 484 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 FAM216AQ8WUB2 273 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 FGF23Q9GZV9 251 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-204ENST00000566354 PLK3Q9H4B4 646 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 SEPSECSQ9HD40 501 aaKnown RBP11.24□□□□□ -0.61
VPS4A-204ENST00000566354 URGCP-MRPS24S4R325 110 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 SEC14L6B5MCN3 397 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 MRPL33O75394 65 aaKnown RBP11.24□□□□□ -0.61
VPS4A-204ENST00000566354 NXPH3O95157 252 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 SERPINE2P07093 398 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 MRPS11P82912 194 aaKnown RBP11.24□□□□□ -0.61
VPS4A-204ENST00000566354 MRPL21Q7Z2W9 205 aaKnown RBP11.24□□□□□ -0.61
VPS4A-204ENST00000566354 LINC00596Q86U02 117 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 ZADH2Q8N4Q0 377 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 NDUFAF3Q9BU61 184 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 CALHM2Q9HA72 323 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 TMEM242Q9NWH2 141 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 OR2W1Q9Y3N9 320 aa11.24□□□□□ -0.61
VPS4A-204ENST00000566354 TRBV6-6A0A0A6YYG2 114 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 TGIF2-C20orf24A0A0A6YYL0 155 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 C1QTNF9BB2RNN3 333 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 SLC33A1O00400 549 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HSPB6O14558 160 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 CYB5BO43169 146 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 TNFSF12O43508 249 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 WISP2O76076 250 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 C1QTNF9P0C862 333 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 CCNOP22674 350 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 LHX2P50458 406 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 ARF1P84077 181 aaKnown RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 SRYQ05066 204 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 PNRC1Q12796 327 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 SLC10A1Q14973 349 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 OR5A2Q8NGI9 324 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 S100PBPQ96BU1 408 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 GPR146Q96CH1 333 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 ZNF845Q96IR2 970 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 LINC00470Q9BZP3 86 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 IL36RNQ9UBH0 155 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 RNF150Q9ULK6 438 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 KIAA1324LA8MWY0 1029 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BKO60814 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 IGHV3-9P01782 118 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BJP06899 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BOP23527 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BBP33778 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 PLA2G5P39877 138 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 CD200P41217 278 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BDP58876 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BCP62807 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST2H2BEQ16778 126 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 PYY3Q5JQD4 70 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 IGFL3Q6UXB1 125 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 MRPL30Q8TCC3 161 aaKnown RBP11.23□□□□□ -0.61
VPS4A-204ENST00000566354 SCGB1C1Q8TD33 95 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 TNFRSF14Q92956 283 aa11.23□□□□□ -0.61
VPS4A-204ENST00000566354 HIST1H2BHQ93079 126 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms