RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ENSAO43768 121 aaKnown RBP25.04■■□□□ 1.6
CTCF-203ENST00000566078 CD34P28906 385 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 GPR12P47775 334 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 FCN2Q15485 313 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 C11orf88Q6PI97 169 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 C12orf45Q8N5I9 185 aaPredicted RBP25.04■■□□□ 1.6
CTCF-203ENST00000566078 UXS1Q8NBZ7 420 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 C5orf30Q96GV9 206 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 FAM157AC9JC47 383 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 FOXH1O75593 365 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 PGLYRP1O75594 196 aaPredicted RBP25.04■■□□□ 1.6
CTCF-203ENST00000566078 SLC22A5O76082 557 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 DUS4LO95620 317 aaKnown RBP25.04■■□□□ 1.6
CTCF-203ENST00000566078 IFNA2P01563 188 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 TRAPPC2P0DI81 140 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 TRAPPC2BP0DI82 140 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 MITD1Q8WV92 249 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 PRR13Q9NZ81 148 aa25.04■■□□□ 1.6
CTCF-203ENST00000566078 hCG_1809904A0A1W2PP81 198 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 A0A1W2PPE2 198 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 A0A1W2PR64 198 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 A0A1W2PRV1 198 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 MSMO1Q15800 293 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 PHB2Q99623 299 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 TMEM133Q9H2Q1 129 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 KCNIP3Q9Y2W7 256 aa25.03■■□□□ 1.6
CTCF-203ENST00000566078 OR5AC1P0C628 307 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 ARF6P62330 175 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 Q3ZCU0 254 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 LIN54Q6MZP7 749 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 SLC25A48Q6ZT89 311 aaKnown RBP25.02■■□□□ 1.6
CTCF-203ENST00000566078 ZBTB34Q8NCN2 500 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 SDHAF2Q9NX18 166 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 MAP1AP78559 2803 aaPredicted RBP25.02■■□□□ 1.6
CTCF-203ENST00000566078 WNK2Q9Y3S1 2297 aa25.02■■□□□ 1.6
CTCF-203ENST00000566078 A0A087X0M5 115 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 IGHV2-70DA0A0C4DH43 119 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 A0A1B0GX30 115 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 M0R1W7 72 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 ANXA3P12429 323 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 PAX2Q02962 417 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 Q5PR19 223 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 BTNL3Q6UXE8 466 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 AKAP14Q86UN6 197 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 GALNT14Q96FL9 552 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 UNC79Q9P2D8 2635 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 C3orf85A0A1B0GTC6 90 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 SULT1A3P0DMM9 295 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 SULT1A4P0DMN0 295 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 DLX1P56177 255 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 ANKRD55Q3KP44 614 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 SP6Q3SY56 376 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 Q8N7P7 452 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 OR11H7Q8NGC8 314 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 OR51H1Q8NH63 302 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 ZNRD1Q9P1U0 126 aa25.01■■□□□ 1.59
CTCF-203ENST00000566078 MED13LQ71F56 2210 aa25■■□□□ 1.59
CTCF-203ENST00000566078 KCTD9Q7L273 389 aa25■■□□□ 1.59
CTCF-203ENST00000566078 LYG1Q8N1E2 194 aa25■■□□□ 1.59
CTCF-203ENST00000566078 KIR3DL3Q8N743 410 aa25■■□□□ 1.59
CTCF-203ENST00000566078 COQ8AQ8NI60 647 aa25■■□□□ 1.59
CTCF-203ENST00000566078 TP53RKQ96S44 253 aa25■■□□□ 1.59
CTCF-203ENST00000566078 NEURL2Q9BR09 285 aa25■■□□□ 1.59
CTCF-203ENST00000566078 LPAR2Q9HBW0 351 aa25■■□□□ 1.59
CTCF-203ENST00000566078 MGAT4CQ9UBM8 478 aa25■■□□□ 1.59
CTCF-203ENST00000566078 USF1P22415 310 aaPredicted RBP24.99■■□□□ 1.59
CTCF-203ENST00000566078 DMRTB1Q96MA1 342 aa24.99■■□□□ 1.59
CTCF-203ENST00000566078 MMP26Q9NRE1 261 aa24.99■■□□□ 1.59
CTCF-203ENST00000566078 A8MV72 311 aaPredicted RBP24.98■■□□□ 1.59
CTCF-203ENST00000566078 PRB3Q04118 309 aaPredicted RBP24.98■■□□□ 1.59
CTCF-203ENST00000566078 TMEM187Q14656 261 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 RPL39P5Q59GN2 51 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 ABHD12Q8N2K0 398 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 C8orf31Q8N9H6 132 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 OR9G1Q8NH87 305 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 HECTD1Q9ULT8 2610 aa24.98■■□□□ 1.59
CTCF-203ENST00000566078 SAA2-SAA4A0A096LPE2 208 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 J3QR06 171 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 CCNKO75909 580 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 SAA2P0DJI9 122 aaPredicted RBP24.97■■□□□ 1.59
CTCF-203ENST00000566078 CXCL3P19876 107 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 F2RP25116 425 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 EIF4EBP1Q13541 118 aaPredicted RBP24.97■■□□□ 1.59
CTCF-203ENST00000566078 C2orf68Q2NKX9 166 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 ODF3L1Q8IXM7 274 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 SIRT7Q9NRC8 400 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 POLR3KQ9Y2Y1 108 aaPredicted RBP24.97■■□□□ 1.59
CTCF-203ENST00000566078 CR1P17927 2039 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 IGHV2-26A0A0B4J1V2 119 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 RNF212BA8MTL3 300 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 GOSR2O14653 212 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 RAB29O14966 203 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 ZNF16P17020 682 aaPredicted RBP24.97■■□□□ 1.59
CTCF-203ENST00000566078 PIPOXQ9P0Z9 390 aa24.97■■□□□ 1.59
CTCF-203ENST00000566078 A0A0B4J2A0 478 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 H0Y980 276 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 COX7A1P24310 79 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 CD83Q01151 205 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 LINC00311Q8N616 119 aa24.96■■□□□ 1.59
CTCF-203ENST00000566078 ZNF436-AS1Q8NC38 126 aaPredicted RBP24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms